Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RPQ07_RS25210 Genome accession   NZ_CP135086
Coordinates   5627416..5629347 (-) Length   643 a.a.
NCBI ID   WP_313946457.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5622416..5634347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS25195 (RPQ07_25195) - 5622789..5624051 (+) 1263 WP_313946454.1 NAD(P)/FAD-dependent oxidoreductase -
  RPQ07_RS25200 (RPQ07_25200) dnaG 5624096..5625997 (+) 1902 WP_313946455.1 DNA primase -
  RPQ07_RS25205 (RPQ07_25205) - 5626116..5627378 (+) 1263 WP_313946456.1 RNA polymerase sigma factor -
  RPQ07_RS25210 (RPQ07_25210) rcrQ 5627416..5629347 (-) 1932 WP_313946457.1 ABC transporter ATP-binding protein Regulator
  RPQ07_RS25215 (RPQ07_25215) rcrP 5629344..5631077 (-) 1734 WP_313946458.1 ABC transporter ATP-binding protein Regulator
  RPQ07_RS25220 (RPQ07_25220) - 5631169..5632614 (-) 1446 WP_313946459.1 FGGY family carbohydrate kinase -
  RPQ07_RS25225 (RPQ07_25225) - 5632651..5632950 (-) 300 WP_313946460.1 YtxH domain-containing protein -
  RPQ07_RS25245 (RPQ07_25245) - 5633643..5633792 (-) 150 WP_313946461.1 hypothetical protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69272.69 Da        Isoelectric Point: 5.5677

>NTDB_id=808779 RPQ07_RS25210 WP_313946457.1 5627416..5629347(-) (rcrQ) [Streptomyces sp. AM8-1-1]
MSGPGGRMMMGPVERSMNFKGSGKRLLKRLAPDRRLLWVMLAAGVLSVAFSVVGPLVLGRATDLVFAGVVGRGMPEGTTK
SQAIDGLRDKDQGGLADMLSGVDFTPGEGIDFTAVGHVLLVALALYVISGLLALVSTRLSIRVINRAVYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVATKVGKRS
QPHFVQQWKSTGTLNAHIEEMYTGHALVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLIQSGVASAERIFELLDAEEQEADAPAAGRPERRLGRVALEKV
AFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTAGRISLDGVDIADMSREELRSGIGMVLQDTWL
FGGTIADNIAYGAARDVTRAEIEEAARAAHADRFIRTLPEGYDTVLGDDGAEGAGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDGLLAAEGAYARLYSAQFAQAVV
EVE

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=808779 RPQ07_RS25210 WP_313946457.1 5627416..5629347(-) (rcrQ) [Streptomyces sp. AM8-1-1]
ATGAGCGGGCCGGGTGGACGCATGATGATGGGCCCGGTCGAGCGGTCCATGAACTTCAAGGGCTCGGGCAAGCGGCTGCT
GAAGCGGCTCGCGCCCGACCGGAGACTGCTGTGGGTGATGCTCGCGGCGGGTGTGCTGAGCGTCGCGTTCTCGGTGGTCG
GGCCGCTGGTGCTGGGCCGGGCGACCGACCTCGTCTTCGCGGGTGTCGTCGGCCGGGGCATGCCGGAGGGGACCACCAAG
TCCCAGGCGATCGACGGTCTGCGGGACAAGGACCAGGGCGGACTCGCGGACATGCTGTCCGGGGTGGACTTCACGCCCGG
CGAGGGCATCGACTTCACCGCCGTCGGTCATGTGCTGCTGGTGGCGCTCGCGCTGTACGTGATCTCGGGGCTGCTGGCGC
TGGTCTCGACCCGGCTGTCGATCCGGGTGATCAACCGGGCCGTGTACCGGATGCGTGAGGACGTCCAGGCGAAGCTGTCC
CGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATCGACAACATCTC
GCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTGACCATCGTCGGTGTACTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCCCTCGTCACCGTGCCCGTGTCGGTGTTCGTGGCGACGAAGGTCGGCAAGCGGTCA
CAGCCGCACTTCGTGCAGCAGTGGAAGTCCACCGGGACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACGCCCT
GGTGAAGGTCTTCGGACGGCAGGACGAGTCCGCCAGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGATTCA
AGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTACGTGCTGGTGGCGGTCGTC
GGCGGACTGCGGGTCGCGTCCGGCGCCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCCATGGCGAACCTGATCCAGTCGGGTGTCGCGTCCGCCGAGCGGATCTTCGAACTGCTGG
ACGCCGAGGAGCAGGAGGCCGACGCACCGGCCGCCGGGCGCCCCGAGCGGCGCCTCGGCCGGGTCGCCCTGGAGAAGGTC
GCCTTCCGCTACGACCCGGACAAGCCGCTCATCGAGGATCTGTCGCTGACGGTGGAACCGGGCCACACGGTCGCGATCGT
GGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGCGGGGCGGATCAGCC
TCGACGGCGTCGACATAGCGGACATGTCGCGGGAGGAACTGCGGTCCGGTATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGACAACATCGCCTACGGCGCCGCCCGGGACGTGACGCGGGCGGAGATCGAGGAGGCCGCGCG
CGCCGCGCACGCCGACCGCTTCATCCGTACGCTGCCCGAGGGCTACGACACGGTGCTCGGCGACGACGGAGCCGAGGGCG
CGGGAGTGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTCGACACCCGTACGGAGGTCCTGATCCAGAAGGCGATGGCACGTCTCGCCCACGGCCGTACGAG
CTTTGTGATCGCCCACCGGCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGGTCGATCGTCGAAC
AGGGCACGCACGACGGCCTGTTGGCGGCGGAGGGCGCCTATGCGCGGCTGTATTCGGCGCAGTTCGCGCAGGCGGTCGTC
GAGGTGGAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-564)

ABC transporter transmembrane region (ABC_membrane)

(39-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.583

97.045

0.384