Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS23860 Genome accession   NZ_CP135086
Coordinates   5293174..5293824 (-) Length   216 a.a.
NCBI ID   WP_313946214.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5288174..5298824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS23845 (RPQ07_23845) - 5288891..5290366 (+) 1476 WP_313946211.1 sodium:solute symporter -
  RPQ07_RS23850 (RPQ07_23850) speB 5290408..5291388 (+) 981 WP_313946212.1 agmatinase -
  RPQ07_RS23855 (RPQ07_23855) - 5291385..5293067 (+) 1683 WP_313946213.1 thiamine pyrophosphate-binding protein -
  RPQ07_RS23860 (RPQ07_23860) vraR 5293174..5293824 (-) 651 WP_313946214.1 response regulator transcription factor Regulator
  RPQ07_RS23865 (RPQ07_23865) - 5293829..5295004 (-) 1176 WP_313946215.1 sensor histidine kinase -
  RPQ07_RS23870 (RPQ07_23870) - 5295112..5296047 (+) 936 WP_313946216.1 ABC transporter ATP-binding protein -
  RPQ07_RS23875 (RPQ07_23875) - 5296044..5296787 (+) 744 WP_313946217.1 ABC transporter permease -
  RPQ07_RS23880 (RPQ07_23880) - 5296848..5297189 (-) 342 WP_313946218.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22887.52 Da        Isoelectric Point: 4.9548

>NTDB_id=808774 RPQ07_RS23860 WP_313946214.1 5293174..5293824(-) (vraR) [Streptomyces sp. AM8-1-1]
MPISVLLVDDEPLVRAGLRAVLEAQPDIEVTGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVADPPKI
LVITTFENDEYVYEALRAGAAGFLLKRARPTEIVHAVRLVAEGESLLFPAAVRSLAAEYGSGTARAAMERAALTEREAAV
LRLMARGLTNAEIAAQLVVGTETVKTHVSAVLGKLGARDRTQAVIAAYESGFVTPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=808774 RPQ07_RS23860 WP_313946214.1 5293174..5293824(-) (vraR) [Streptomyces sp. AM8-1-1]
GTGCCGATCTCCGTACTCCTCGTCGACGACGAACCCCTGGTCCGGGCCGGGCTGCGGGCCGTCCTGGAGGCGCAGCCGGA
CATCGAGGTGACCGGTGAGGCGGCCGACGGCGCGGCGGTGATACCGCTGGTGCGCCAACTGCGCCCCGATGTGGTGGCGA
TGGACGTCCGGATGCCCCTGCTCGACGGCATCGAGGCGACGCGCGCCGTGCTGCGGACGGTCGCCGATCCGCCGAAGATC
CTGGTCATCACGACCTTCGAGAACGACGAGTACGTCTACGAGGCCCTGCGTGCCGGCGCCGCGGGCTTTCTGCTCAAGCG
GGCCCGCCCCACCGAGATCGTGCACGCGGTCCGGCTCGTCGCGGAGGGCGAGTCGCTGCTCTTCCCGGCCGCGGTGCGTT
CGCTGGCCGCGGAGTACGGCAGCGGCACCGCCCGTGCGGCGATGGAGCGCGCCGCGCTGACCGAGCGGGAGGCGGCGGTG
CTGCGGCTGATGGCACGCGGTCTGACGAACGCGGAGATCGCCGCGCAGCTGGTCGTCGGCACGGAGACGGTCAAGACCCA
TGTCAGCGCCGTACTGGGGAAGCTGGGGGCCCGCGACCGTACCCAGGCGGTCATCGCCGCGTACGAGTCGGGGTTCGTCA
CGCCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

100

0.412