Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RPQ07_RS13125 Genome accession   NZ_CP135086
Coordinates   2939752..2940810 (-) Length   352 a.a.
NCBI ID   WP_313944308.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2934752..2945810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS13105 (RPQ07_13105) - 2934762..2935685 (-) 924 WP_313944304.1 ABC transporter permease -
  RPQ07_RS13110 (RPQ07_13110) - 2935757..2937385 (-) 1629 WP_313944305.1 ABC transporter substrate-binding protein -
  RPQ07_RS13115 (RPQ07_13115) - 2937454..2938410 (-) 957 WP_313944306.1 GNAT family N-acetyltransferase -
  RPQ07_RS13120 (RPQ07_13120) - 2938602..2939759 (-) 1158 WP_313944307.1 dipeptide ABC transporter ATP-binding protein -
  RPQ07_RS13125 (RPQ07_13125) amiE 2939752..2940810 (-) 1059 WP_313944308.1 ABC transporter ATP-binding protein Regulator
  RPQ07_RS13130 (RPQ07_13130) - 2940825..2941778 (-) 954 WP_313944309.1 ABC transporter permease -
  RPQ07_RS13135 (RPQ07_13135) - 2941771..2942703 (-) 933 WP_313944310.1 ABC transporter permease -
  RPQ07_RS13140 (RPQ07_13140) - 2942873..2944510 (-) 1638 WP_313944311.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38573.52 Da        Isoelectric Point: 6.2400

>NTDB_id=808748 RPQ07_RS13125 WP_313944308.1 2939752..2940810(-) (amiE) [Streptomyces sp. AM8-1-1]
MTIIDKTASVPAPRDGDDYDGSLLEVRDLHVEFHTREGVAKAVNGVNYSVNAGETLAVLGESGSGKSVTAQAIMGILDMP
PGKIPQGEIFFRGQDMLTMSYEERRQIRGRKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSKKDAKAKAIELMDKVK
IPAAKARVNDYAHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELFAIKGLPPNLLRVPSGCAFNPRCTKAEDICRS
EIPALLPVTEQDGTELVGRGSACHYWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=808748 RPQ07_RS13125 WP_313944308.1 2939752..2940810(-) (amiE) [Streptomyces sp. AM8-1-1]
ATGACCATCATCGACAAGACCGCGTCTGTCCCCGCCCCGCGCGACGGCGACGACTACGATGGCTCGCTGCTCGAAGTCCG
CGACCTGCATGTGGAGTTCCACACCCGCGAAGGTGTGGCCAAGGCGGTCAACGGTGTCAACTACAGCGTGAACGCCGGTG
AGACGCTCGCGGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTCGACATGCCG
CCCGGCAAGATCCCGCAGGGCGAGATCTTCTTCCGCGGCCAGGACATGCTCACGATGTCCTACGAGGAGCGCAGGCAGAT
CCGTGGCCGCAAGATCGCCATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTCCTCACCGTGGGCTACCAGCTCG
GCGAGATGTTCCGGGTCCACCAGGGCCTGTCCAAGAAGGACGCCAAGGCCAAGGCCATCGAGCTGATGGACAAGGTCAAG
ATCCCCGCCGCCAAGGCCCGGGTCAACGACTACGCGCACCAGTTCTCGGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTCGCCCTGGAACCGGACCTGATCATCGCCGATGAGCCCACGACCGCGCTCGACGTCACCGTCCAGGCCCAGGTCA
TGGAGCTGCTCGCGGAGTTGCAGCGCGAGTACAACATGGGCTTGATCCTGATCACCCACGACCTCGGCGTGGTTGCCGAC
GTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGACCGCCCCGGTGCACGAGCTGTACAAGCGCCCCGC
GCACCCGTACACCCGGGGCCTTCTCGACTCCATTCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTTTGCCATCAAGGGCC
TGCCGCCCAACCTGCTGCGCGTACCGTCCGGTTGTGCGTTCAACCCGCGCTGCACCAAGGCGGAGGACATCTGCCGCTCC
GAGATCCCGGCACTGCTTCCGGTCACCGAGCAGGACGGCACGGAACTGGTCGGCCGCGGCAGCGCGTGCCATTACTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.689

84.091

0.435
  amiE Streptococcus thermophilus LMG 18311

51.014

84.091

0.429
  amiE Streptococcus thermophilus LMD-9

51.014

84.091

0.429
  oppD Streptococcus mutans UA159

48.377

87.5

0.423