Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RPQ07_RS13095 Genome accession   NZ_CP135086
Coordinates   2932778..2933779 (-) Length   333 a.a.
NCBI ID   WP_313944302.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2927778..2938779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS13075 (RPQ07_13075) - 2928057..2928251 (-) 195 WP_142213873.1 hypothetical protein -
  RPQ07_RS13080 (RPQ07_13080) - 2928408..2930543 (+) 2136 WP_313944299.1 S9 family peptidase -
  RPQ07_RS13085 (RPQ07_13085) - 2930568..2931521 (-) 954 WP_313944300.1 hypothetical protein -
  RPQ07_RS13090 (RPQ07_13090) - 2931760..2932785 (-) 1026 WP_313944301.1 dipeptide ABC transporter ATP-binding protein -
  RPQ07_RS13095 (RPQ07_13095) amiE 2932778..2933779 (-) 1002 WP_313944302.1 ABC transporter ATP-binding protein Regulator
  RPQ07_RS13100 (RPQ07_13100) - 2933789..2934769 (-) 981 WP_313944303.1 ABC transporter permease -
  RPQ07_RS13105 (RPQ07_13105) - 2934762..2935685 (-) 924 WP_313944304.1 ABC transporter permease -
  RPQ07_RS13110 (RPQ07_13110) - 2935757..2937385 (-) 1629 WP_313944305.1 ABC transporter substrate-binding protein -
  RPQ07_RS13115 (RPQ07_13115) - 2937454..2938410 (-) 957 WP_313944306.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36184.07 Da        Isoelectric Point: 6.4150

>NTDB_id=808747 RPQ07_RS13095 WP_313944302.1 2932778..2933779(-) (amiE) [Streptomyces sp. AM8-1-1]
MTVETRAAAPLLEVRDLHVEFHTRDGVAKAVNGVAFTVAEGETLAVLGESGSGKSVTAQAVMGILDVPPGKITGGEILFR
GQDLLTLKEDERRKIRGAGMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMKRKEARAKAVELMERVGIPGAKERVGQYP
HQFSGGMRQRIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLATLQSELAMGLVLITHDLGVVADVADRIAVMYAGR
IVETAPVHDIYKAPAHPYTKGLLESIPRLDQKGRELYAIKGLPPNLMDIPPGCAFNPRCPMARDICRRDVPPLYEVSPER
RSACHFWEETLHG

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=808747 RPQ07_RS13095 WP_313944302.1 2932778..2933779(-) (amiE) [Streptomyces sp. AM8-1-1]
ATGACCGTCGAGACCCGGGCCGCCGCGCCGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCACACCCGCGACGGTGT
GGCCAAGGCCGTCAACGGCGTCGCCTTCACGGTCGCCGAGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCGGGGA
AGTCCGTCACCGCACAGGCCGTCATGGGCATCCTGGACGTCCCTCCGGGAAAGATCACAGGCGGCGAGATCCTCTTCCGC
GGACAGGACCTGCTGACGCTCAAGGAGGACGAGCGGCGGAAGATCCGCGGGGCCGGGATGGCCATGATCTTCCAGGACGC
GCTCTCCTCGCTGAACCCGGTGCTCAGCGTCGGCGACCAGCTCGGCGAGATGTTCGTCGTGCACCGCGGGATGAAACGCA
AAGAGGCCCGGGCGAAGGCCGTCGAACTGATGGAGCGGGTCGGCATCCCGGGGGCGAAGGAGCGGGTGGGTCAGTACCCG
CACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCCCTGGCGCTCGAACCGGCCCTGATCATCGCCGA
CGAACCCACGACCGCGCTCGATGTCACCGTCCAGGCCCAGGTGATGGACCTGCTGGCCACGCTCCAGAGCGAACTTGCGA
TGGGACTCGTCCTGATCACCCACGACCTCGGGGTGGTGGCCGACGTCGCGGACAGGATCGCCGTGATGTACGCGGGCCGG
ATCGTCGAGACGGCCCCCGTCCACGACATCTACAAGGCTCCTGCCCACCCGTACACCAAGGGCCTGCTGGAGTCGATCCC
GCGCCTGGACCAGAAGGGCCGTGAGCTGTACGCGATCAAGGGCCTGCCGCCGAACCTGATGGACATCCCGCCCGGCTGCG
CCTTCAACCCGCGCTGTCCGATGGCGCGGGACATCTGCCGCAGGGACGTACCGCCGCTGTACGAGGTGTCACCGGAGCGC
AGAAGCGCCTGCCACTTCTGGGAGGAGACTCTCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(242-306)

ABC transporter (ABC_tran)

(32-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.838

92.793

0.462
  oppD Streptococcus mutans UA159

48.408

94.294

0.456
  amiE Streptococcus thermophilus LMG 18311

48.377

92.492

0.447
  amiE Streptococcus thermophilus LMD-9

48.377

92.492

0.447