Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RPQ07_RS10635 Genome accession   NZ_CP135086
Coordinates   2381346..2383538 (-) Length   730 a.a.
NCBI ID   WP_313943866.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2376346..2388538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS10605 (RPQ07_10605) rnc 2377078..2378010 (-) 933 WP_313943862.1 ribonuclease III -
  RPQ07_RS10610 (RPQ07_10610) rpmF 2378030..2378203 (-) 174 WP_026165248.1 50S ribosomal protein L32 -
  RPQ07_RS10615 (RPQ07_10615) - 2378206..2378820 (-) 615 WP_313943863.1 DUF177 domain-containing protein -
  RPQ07_RS10620 (RPQ07_10620) - 2379011..2380087 (-) 1077 WP_313943864.1 cell division initiation protein -
  RPQ07_RS10625 (RPQ07_10625) coaD 2380183..2380662 (-) 480 WP_313948853.1 pantetheine-phosphate adenylyltransferase -
  RPQ07_RS10630 (RPQ07_10630) rsmD 2380689..2381273 (-) 585 WP_313943865.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RPQ07_RS10635 (RPQ07_10635) recG 2381346..2383538 (-) 2193 WP_313943866.1 ATP-dependent DNA helicase RecG Machinery gene
  RPQ07_RS10640 (RPQ07_10640) - 2383720..2385552 (+) 1833 WP_313943867.1 HSP90 family protein -
  RPQ07_RS10645 (RPQ07_10645) - 2385549..2388458 (+) 2910 WP_313943868.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79394.99 Da        Isoelectric Point: 5.9835

>NTDB_id=808738 RPQ07_RS10635 WP_313943866.1 2381346..2383538(-) (recG) [Streptomyces sp. AM8-1-1]
MDRVSALDEPLKKTLGAATAKVMAEQLDLHTTGDLLHHYPRRYEERGQLTRLAELPLDEDVTVVAQVADSRVHTFNAGRG
KRLEITITDGSGRLQLVFFGRGVHKPHQELLPGSRAMFAGKVSVFNRKLQLAHPTYAKLAADSGDDSADVESWAGALIPI
YPACKGLESWKIAKAVDAVLPSATEAVDPLPPALREGRGFVPLPEALLKVHRPHTKADIEDARQRLKWDEAFVLQVALAR
RRFAETQLPAVARRPVPGGLLDAFDAKLPFTLTDGQIKVTEEIFGDLATEHPMHRLLQGEVGSGKTMVALRAMLTVVDTG
GQAAMLAPTEVLAQQHHRSVVEMMGELAEGGMLGSAEKATKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKV
QFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKP
HFLARAWERVREEVGKGHQAYVVCPRIGDGEDEKTKKKSAEDEAEKRPPLAVLEIAEELSRGALDGLRVEVLHGRMAPDD
KDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEATPARARLG
AVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVTVVREDPELERLPELRTALDALLD
KERERYLDKG

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=808738 RPQ07_RS10635 WP_313943866.1 2381346..2383538(-) (recG) [Streptomyces sp. AM8-1-1]
ATGGATCGCGTGTCCGCGCTCGACGAACCCCTGAAGAAGACGCTCGGAGCCGCCACCGCGAAGGTGATGGCCGAGCAGCT
CGACCTGCACACCACCGGCGATCTGCTGCACCACTACCCCCGGCGTTATGAGGAGCGCGGCCAGCTCACCCGGCTCGCCG
AGCTGCCGCTGGACGAGGACGTCACCGTGGTCGCGCAGGTCGCCGACTCCCGGGTGCACACCTTCAACGCCGGCCGCGGC
AAGCGGCTGGAGATCACCATCACGGACGGCAGTGGCCGGCTCCAGCTGGTCTTCTTCGGCCGGGGTGTGCACAAACCGCA
CCAGGAACTGCTGCCCGGCAGCCGGGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCAAGCTCCAGCTGGCCCACC
CGACGTACGCCAAACTCGCCGCCGACAGCGGGGACGACTCCGCCGATGTCGAGTCCTGGGCGGGCGCGCTCATCCCCATC
TACCCGGCCTGCAAGGGGCTGGAGTCGTGGAAGATCGCCAAGGCGGTCGACGCCGTGCTGCCGAGCGCCACGGAGGCGGT
CGATCCACTGCCGCCCGCGCTGCGGGAGGGACGCGGCTTCGTCCCGCTGCCCGAGGCGCTGCTGAAGGTCCACCGGCCGC
ACACCAAGGCCGACATCGAGGACGCCCGGCAGCGGCTGAAGTGGGACGAGGCGTTCGTGCTCCAGGTGGCGCTGGCCAGG
CGCCGCTTCGCGGAGACCCAACTGCCCGCCGTGGCCCGCCGGCCCGTCCCGGGCGGGCTGCTCGACGCCTTCGACGCCAA
GCTGCCCTTCACCCTCACCGACGGGCAGATCAAGGTCACCGAGGAGATCTTCGGCGACCTGGCCACCGAGCACCCGATGC
ACCGGCTGCTCCAGGGCGAGGTCGGCTCCGGCAAGACCATGGTCGCCCTGCGCGCCATGCTCACCGTGGTGGACACCGGC
GGTCAGGCGGCGATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCGTCGTCGAGATGATGGGCGAGCT
CGCCGAGGGCGGCATGCTCGGGAGCGCGGAGAAGGCCACCAAGGTCGTGCTGCTGACCGGTTCGATGGGCGCCGCCGCCC
GCCGGCAGGCGCTGCTCGACCTGGTGACCGGTGAGGCCGGCATCGTCATCGGCACCCATGCACTCATCGAGGACAAGGTG
CAGTTCCACGATCTCGGACTCGTCGTGGTCGACGAGCAGCACCGCTTCGGTGTGGAGCAGCGCGACGCCCTGCGCTCCAA
GGGGAAGCAGCCGCCGCATCTGCTGGTGATGACCGCGACCCCGATCCCGCGGACGGTCGCCATGACGGTCTTCGGTGACC
TGGAGACCTCCGTACTGGACCAGTTGCCCGCCGGCCGCTCACCCATCGCCACCCATGTCGTCCCGGCCCAGGACAAGCCG
CACTTCCTGGCACGCGCCTGGGAGCGCGTCCGCGAAGAGGTCGGCAAGGGCCACCAGGCGTATGTGGTGTGCCCCCGCAT
CGGCGACGGCGAGGACGAGAAGACGAAGAAGAAGTCCGCCGAGGACGAGGCGGAGAAGAGGCCGCCGCTCGCCGTCCTGG
AGATCGCCGAGGAGCTCTCCCGCGGAGCCCTCGACGGGCTGCGCGTCGAGGTCCTGCACGGCCGGATGGCGCCCGACGAC
AAGGACGACGTCATGCGCCGCTTCGCCGCGGGAGAGGTGGACGTCCTGGTCGCCACCACCGTGATCGAGGTCGGGGTCAA
CGTCCCGAACGCCACCGCCATGGTGATCATGGACGCGGACCGGTTCGGTGTCTCGCAGCTGCACCAGCTCCGCGGCCGGG
TGGGCCGTGGCTCCGCCCCCGGACTGTGCCTGTTGGTCACCGAGATGCCCGAGGCGACCCCGGCCAGGGCCCGGCTCGGC
GCGGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGTATCGACCTCGAACAGCGCCGCGAGGGCGATGTCCTCGGTCA
GGCCCAGTCGGGTGTGCGCTCCTCGCTGCGGATGCTCACCGTCATCGACGACGAGGAGGTCATCGCCGCCGCCCGCGAGG
AGGCCGTCACGGTCGTCCGCGAGGACCCGGAGCTGGAGCGGCTCCCCGAGCTGCGCACGGCCCTGGACGCCCTGCTGGAC
AAGGAGCGCGAGCGGTATCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(537-617)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(645-707)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-135)

DEAD/DEAH box helicase (DEAD)

(294-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.281

95.205

0.374