Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS07600 Genome accession   NZ_CP135086
Coordinates   1674993..1675664 (-) Length   223 a.a.
NCBI ID   WP_313943291.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1669993..1680664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS07575 (RPQ07_07575) - 1670109..1671107 (-) 999 WP_313943287.1 sugar ABC transporter substrate-binding protein -
  RPQ07_RS07580 (RPQ07_07580) - 1671269..1671988 (-) 720 WP_313948814.1 GntR family transcriptional regulator -
  RPQ07_RS07585 (RPQ07_07585) - 1672144..1673148 (+) 1005 WP_313943288.1 Gfo/Idh/MocA family oxidoreductase -
  RPQ07_RS07590 (RPQ07_07590) - 1673289..1673708 (-) 420 WP_313943289.1 PaaI family thioesterase -
  RPQ07_RS07595 (RPQ07_07595) - 1673805..1674983 (-) 1179 WP_313943290.1 cytochrome P450 -
  RPQ07_RS07600 (RPQ07_07600) vraR 1674993..1675664 (-) 672 WP_313943291.1 response regulator transcription factor Regulator
  RPQ07_RS07605 (RPQ07_07605) - 1675661..1676890 (-) 1230 WP_313943292.1 sensor histidine kinase -
  RPQ07_RS07610 (RPQ07_07610) - 1677037..1677246 (+) 210 WP_313943293.1 hypothetical protein -
  RPQ07_RS07615 (RPQ07_07615) - 1677289..1677663 (-) 375 WP_313943294.1 hypothetical protein -
  RPQ07_RS07620 (RPQ07_07620) - 1677700..1678314 (-) 615 WP_313943295.1 dihydrofolate reductase family protein -
  RPQ07_RS07625 (RPQ07_07625) - 1678543..1679271 (+) 729 WP_313943296.1 SDR family NAD(P)-dependent oxidoreductase -
  RPQ07_RS07630 (RPQ07_07630) alc 1679525..1680643 (-) 1119 WP_313948815.1 allantoicase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23885.34 Da        Isoelectric Point: 4.7530

>NTDB_id=808727 RPQ07_RS07600 WP_313943291.1 1674993..1675664(-) (vraR) [Streptomyces sp. AM8-1-1]
MTIRLLVVDDDPLVRAGLSFMLGGADDLEIVGEGADGSEVPELIDRLSPDVVLMDIRMPTVDGLRATEELRRRPDAPEVV
VLTTFHADEQVLRALRAGAAGFVLKDTPPAEIVAAVRRVASGDPVLSPAVTRQLMSHVADRVPDPRRSTAAQRLDSLAER
EREVAVAVGRGQSNAEIAATLYMSVPTVKTHVSRILAKLDLNNRVQIALLAHDAGLLDGEGPT

Nucleotide


Download         Length: 672 bp        

>NTDB_id=808727 RPQ07_RS07600 WP_313943291.1 1674993..1675664(-) (vraR) [Streptomyces sp. AM8-1-1]
ATGACTATCCGGTTGCTCGTCGTCGATGACGACCCCCTGGTCCGGGCGGGCCTCTCCTTCATGCTCGGCGGGGCCGACGA
CCTCGAGATCGTCGGGGAGGGCGCGGACGGTTCCGAGGTACCGGAACTGATCGACCGGCTCTCGCCCGACGTCGTGCTGA
TGGACATCCGGATGCCGACGGTGGACGGACTGCGCGCCACCGAGGAGCTGCGGCGCAGGCCCGACGCCCCCGAGGTCGTG
GTGCTCACCACGTTCCACGCGGACGAGCAGGTGCTGCGGGCGCTGCGGGCCGGGGCCGCCGGGTTCGTCCTCAAGGACAC
CCCGCCGGCCGAGATCGTCGCCGCGGTGCGGCGGGTGGCTTCCGGGGACCCGGTGCTCTCCCCGGCCGTGACCCGCCAGC
TGATGTCGCACGTCGCCGACCGGGTGCCCGACCCGCGCCGCAGCACGGCGGCCCAGCGGCTGGACTCGCTCGCGGAACGG
GAGCGGGAGGTGGCGGTCGCGGTGGGCCGCGGCCAGTCCAACGCGGAGATCGCGGCGACGCTGTACATGAGCGTGCCGAC
CGTGAAGACCCATGTGTCGCGCATCCTCGCGAAGCTGGATCTCAACAACCGTGTCCAGATCGCGCTGCTCGCGCACGACG
CTGGCCTGCTGGACGGGGAGGGGCCGACGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

97.309

0.368