Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS01965 Genome accession   NZ_CP135086
Coordinates   447938..448594 (+) Length   218 a.a.
NCBI ID   WP_313942216.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 442938..453594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS01945 (RPQ07_01945) map 443167..443934 (+) 768 WP_313942211.1 type I methionyl aminopeptidase -
  RPQ07_RS01950 (RPQ07_01950) - 444128..444493 (-) 366 WP_313942212.1 DUF1801 domain-containing protein -
  RPQ07_RS01955 (RPQ07_01955) - 444884..445789 (-) 906 WP_313942214.1 ADP-ribosylglycohydrolase family protein -
  RPQ07_RS01960 (RPQ07_01960) - 446148..447941 (+) 1794 WP_313942215.1 sensor histidine kinase -
  RPQ07_RS01965 (RPQ07_01965) vraR 447938..448594 (+) 657 WP_313942216.1 response regulator transcription factor Regulator
  RPQ07_RS01970 (RPQ07_01970) - 448625..448978 (-) 354 WP_313942217.1 hypothetical protein -
  RPQ07_RS01975 (RPQ07_01975) - 449183..449782 (+) 600 WP_413777690.1 hypothetical protein -
  RPQ07_RS01980 (RPQ07_01980) - 449995..450882 (+) 888 WP_313942218.1 protein phosphatase 2C domain-containing protein -
  RPQ07_RS01985 (RPQ07_01985) - 451296..451673 (+) 378 WP_313942219.1 hypothetical protein -
  RPQ07_RS01990 (RPQ07_01990) - 451772..452998 (+) 1227 WP_313942220.1 SUKH-4 family immunity protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23690.29 Da        Isoelectric Point: 6.2426

>NTDB_id=808720 RPQ07_RS01965 WP_313942216.1 447938..448594(+) (vraR) [Streptomyces sp. AM8-1-1]
MIRVVLVDDEALIRTGIRLVLETAGDIEIVGEGGDGHEAVELIRRHRPDVLLLDIRMPKLDGLTAVAEITELGSSTQVVM
LTTFGEDEHVARALRAGAAGFLLKDTPPIELAQGVRAAAQGQAILSPQVTRQVIDRYIGPEDNREHEAKRRLQVLTDRER
EVLVLLGGGASNAEIARALFMGEGTVKTHVSRILAKLDCGNRVQAAILAHDARLVRPR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=808720 RPQ07_RS01965 WP_313942216.1 447938..448594(+) (vraR) [Streptomyces sp. AM8-1-1]
GTGATCCGAGTGGTCCTCGTGGACGACGAAGCCCTGATCAGAACGGGCATACGGCTTGTGCTGGAGACAGCCGGAGACAT
CGAGATCGTCGGAGAGGGCGGGGACGGCCACGAAGCAGTCGAGCTGATCCGCCGTCACCGCCCCGACGTCCTCCTGCTCG
ACATCCGGATGCCGAAGCTGGACGGACTGACCGCCGTGGCGGAGATCACCGAACTGGGCTCGAGCACGCAGGTGGTCATG
CTCACCACCTTCGGCGAGGACGAGCACGTCGCCAGAGCCCTGCGCGCCGGCGCGGCCGGATTCCTGCTCAAGGACACCCC
GCCGATCGAACTCGCGCAGGGTGTCCGCGCTGCCGCGCAAGGCCAGGCCATTCTCTCGCCGCAGGTCACGCGACAGGTCA
TCGACAGGTACATCGGACCCGAGGACAACCGCGAACACGAGGCGAAACGACGGCTACAGGTCCTCACCGACCGGGAGCGG
GAGGTCCTCGTGCTGCTCGGTGGCGGGGCGTCGAATGCGGAAATCGCCCGGGCGCTGTTCATGGGAGAGGGCACCGTCAA
AACCCACGTCAGCCGGATCCTCGCCAAGCTGGACTGCGGTAACCGGGTCCAAGCCGCCATCCTGGCGCACGATGCACGGC
TCGTCCGGCCCCGTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)

Bacterial regulatory proteins, luxR family (GerE)

(153-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

98.624

0.385