Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RPQ02_RS34315 Genome accession   NZ_CP135085
Coordinates   7721305..7723728 (-) Length   807 a.a.
NCBI ID   WP_313940441.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7716305..7728728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS34295 (RPQ02_34295) - 7716840..7717730 (-) 891 WP_313940439.1 LysR family transcriptional regulator -
  RPQ02_RS34300 (RPQ02_34300) - 7717825..7718532 (+) 708 WP_078853139.1 succinate dehydrogenase -
  RPQ02_RS34305 (RPQ02_34305) - 7718534..7720483 (+) 1950 WP_313940440.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  RPQ02_RS34310 (RPQ02_34310) - 7720480..7721226 (+) 747 WP_030980404.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  RPQ02_RS34315 (RPQ02_34315) uvrA 7721305..7723728 (-) 2424 WP_313940441.1 excinuclease ABC subunit UvrA Machinery gene
  RPQ02_RS34320 (RPQ02_34320) - 7723898..7724386 (+) 489 WP_030980402.1 nucleotidase -
  RPQ02_RS34325 (RPQ02_34325) - 7724447..7724662 (-) 216 WP_030933957.1 dodecin -
  RPQ02_RS34330 (RPQ02_34330) - 7724864..7726120 (+) 1257 WP_313940442.1 extracellular solute-binding protein -
  RPQ02_RS34335 (RPQ02_34335) - 7726314..7727222 (+) 909 WP_313940443.1 GNAT family N-acetyltransferase -
  RPQ02_RS34340 (RPQ02_34340) - 7727219..7728067 (+) 849 WP_313940444.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 86172.59 Da        Isoelectric Point: 6.5104

>NTDB_id=808706 RPQ02_RS34315 WP_313940441.1 7721305..7723728(-) (uvrA) [Streptomyces sp. AM2-3-1]
MPTPHDRYVRVRGARENNLQDVQVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPQVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGEYPAGAERLDSDAFSPNTAAGACPECHGLGLIHRTTEEL
LVPDPSLSIRDGAIAAWPGAWQGKNLRDVLDTLGYDIGRPWRELDANDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVMHTFADSKSRTLRAKAERFLTGVPCPVCGGSRLRPEAMAVTFAGRTIAELAALPLADLAEVLSAAGGDDTARV
LTADLLARIETVTELGLGYLGLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLAVLGRLKEAG
NTVFVVEHQMDVVRQADWLVDVGPLAGEHGGRVLHSGPPAGLADVLESATRRFLFDRGPVPVREPRTPSGWLRLIGVDRH
NVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGALADRQASTTADLPAERPVPGCASAQGLEAVDRLVQVDQRPIGRT
PRSNLATYTGLFDVVRKLFTATDIARERGYRAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNPQTL
EVTLRGLNIAQVLDLTVESAAGFFAGTPAAERSLRTLLDVGLGYLRLGQPATELSGGEAQRIKLATELQRTRRGHTLYLL
DEPTTGLHPADVEVLMRQLHGLVDGGSTVVVVEHDMAVVAGADWVIDLGPGGGDRGGRIVATGSPTEVADAADSRTAPYL
SAALRPG

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=808706 RPQ02_RS34315 WP_313940441.1 7721305..7723728(-) (uvrA) [Streptomyces sp. AM2-3-1]
ATGCCCACCCCCCACGATCGGTACGTTCGGGTGCGCGGCGCCCGCGAGAACAATCTGCAGGACGTCCAGGTCGACATCCC
GCGCGACACCCTCACCGTCTTCACGGGCGTCTCCGGCTCAGGGAAGTCCTCGCTGGCCTTCGGGACGATCTACGCCGAGG
CTCAGCGCCGCTATTTCGAGTCCGTCGCCCCGTACGCCCGCCGGCTGATCCACCAGGTCGGCGCGCCCCAGGTCGGCGAG
ATCACCGGGCTGCCGCCCGCGGTCTCCCTGGAGCAACGCCGGTCCGCGCCCGGCGCCCGGTCCTCCGTGGGCACGGTCAC
CACGCTGTCCAACTCGCTGCGGATGCTGTTCTCGCGCGCCGGGGAGTATCCTGCCGGCGCCGAGCGGCTGGACTCCGACG
CGTTCTCGCCGAACACCGCCGCCGGGGCCTGCCCCGAGTGCCACGGGCTGGGCCTGATCCACCGCACCACGGAGGAACTG
CTCGTCCCCGACCCGTCGCTGTCGATCCGCGACGGCGCGATCGCGGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTGCG
CGATGTGCTGGACACGCTGGGGTACGACATCGGCCGGCCGTGGCGCGAGCTGGACGCGAACGACCGGGAATGGATCCTCT
TCACCGACGAGCAGCCGGTGGTGACGGTCCATCCGGTGCGTGACGCGGGCCGGATCCAGCGCCCCTACCAGGGCACGTAC
ATGAGCGCGCGGCGCTATGTGATGCACACCTTCGCCGACTCCAAGAGCCGCACCCTGCGTGCCAAGGCCGAGCGCTTCCT
GACCGGTGTCCCCTGCCCGGTCTGCGGCGGCAGCCGGCTGCGCCCGGAGGCGATGGCCGTCACCTTTGCGGGCCGTACGA
TCGCCGAGCTGGCCGCACTTCCCCTCGCGGATCTCGCCGAGGTGCTGTCGGCCGCGGGCGGCGACGACACCGCGCGGGTG
CTGACGGCGGATCTGCTGGCCCGGATCGAGACGGTGACCGAGCTCGGTCTCGGCTATCTCGGCCTCGACCGTACGGCTCC
GACGTTGTCCTCCGGCGAGCTGCAGCGACTGCGGCTCGCCACCCAGCTGCGGTCAGGGCTGTTCGGGGTCGTCTATGTGC
TGGACGAGCCGTCGGCCGGTCTGCACCCGGCGGACACCGAGTCGCTGCTCGCGGTCCTCGGGCGGCTGAAGGAGGCCGGG
AACACGGTCTTCGTCGTGGAGCACCAGATGGATGTGGTGCGGCAGGCGGACTGGCTGGTCGATGTGGGGCCGCTGGCCGG
CGAGCACGGGGGCAGGGTGCTGCACAGCGGGCCCCCGGCCGGCCTCGCGGACGTGCTGGAGTCGGCGACGCGACGGTTCC
TCTTCGACAGGGGTCCGGTGCCGGTGCGGGAGCCGCGTACGCCCTCCGGGTGGCTGAGGCTGATCGGTGTCGACCGGCAC
AATGTGCGCGGAGTCGACGCCGCGTTCCCGCTCGGGGTGTTCACGGCGGTCACCGGTGTCTCCGGCTCGGGCAAATCGAC
CCTGGTCGGCCAGGTGCTCGCCGGAGCTCTCGCCGACCGGCAGGCTTCCACCACCGCCGATCTCCCGGCCGAACGGCCCG
TGCCGGGGTGCGCATCGGCGCAGGGGCTGGAGGCGGTGGACCGTCTCGTCCAGGTCGACCAGCGGCCGATCGGCCGGACC
CCGCGCTCCAACCTGGCCACGTACACCGGTCTCTTCGATGTCGTGAGGAAGCTGTTCACCGCGACCGACATCGCCCGCGA
ACGCGGCTACCGGGCAGGGCGGTTCTCGTTCAATGTGGCGGGTGGGCGGTGCGAGACCTGCCAGGGCGAAGGGTTCGTCT
CCGTCGAACTGCTCTTCCTGCCGAGTACGTATGCGCCCTGCCCGGACTGTCACGGTGCGCGGTACAACCCGCAGACGCTT
GAGGTGACTCTGCGCGGGCTGAACATCGCGCAGGTGCTGGACCTGACGGTGGAGTCGGCCGCCGGCTTCTTCGCGGGGAC
GCCCGCCGCGGAGCGCAGCCTGCGGACGCTGCTCGATGTCGGGCTCGGCTATCTGCGGCTGGGGCAGCCGGCGACGGAGC
TGTCCGGTGGTGAGGCACAGCGGATCAAGCTGGCCACCGAACTGCAGCGCACTCGTCGCGGTCACACCCTGTATCTGCTC
GACGAGCCGACCACGGGTCTGCACCCGGCCGATGTCGAGGTGCTGATGCGGCAGTTGCACGGGCTGGTCGACGGGGGCAG
CACGGTGGTGGTCGTGGAGCACGACATGGCGGTCGTCGCGGGCGCCGACTGGGTGATCGACCTCGGTCCGGGCGGCGGGG
ACCGGGGCGGCCGGATCGTCGCCACGGGATCGCCGACCGAGGTGGCAGATGCGGCGGACAGCCGGACGGCGCCGTATCTG
TCGGCGGCGCTACGACCGGGCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(484-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.061

88.971

0.374
  uvrA Streptococcus pneumoniae TIGR4

42.061

88.971

0.374
  uvrA Streptococcus pneumoniae D39

42.061

88.971

0.374