Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RPQ02_RS32040 Genome accession   NZ_CP135085
Coordinates   7179765..7180592 (-) Length   275 a.a.
NCBI ID   WP_313940046.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7174765..7185592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS32015 (RPQ02_32015) - 7175567..7175971 (-) 405 WP_313940041.1 RidA family protein -
  RPQ02_RS32020 (RPQ02_32020) - 7175968..7177095 (-) 1128 WP_313940042.1 mandelate racemase/muconate lactonizing enzyme family protein -
  RPQ02_RS32025 (RPQ02_32025) - 7177128..7177937 (-) 810 WP_313940043.1 creatininase family protein -
  RPQ02_RS32030 (RPQ02_32030) - 7177979..7178941 (+) 963 WP_313940044.1 ROK family protein -
  RPQ02_RS32035 (RPQ02_32035) - 7178950..7179768 (-) 819 WP_313940045.1 ATP-binding cassette domain-containing protein -
  RPQ02_RS32040 (RPQ02_32040) amiE 7179765..7180592 (-) 828 WP_313940046.1 ABC transporter ATP-binding protein Regulator
  RPQ02_RS32045 (RPQ02_32045) - 7180589..7181494 (-) 906 WP_313940047.1 ABC transporter permease -
  RPQ02_RS32050 (RPQ02_32050) - 7181491..7182471 (-) 981 WP_313940048.1 ABC transporter permease -
  RPQ02_RS32055 (RPQ02_32055) - 7182471..7184045 (-) 1575 WP_313940049.1 ABC transporter substrate-binding protein -
  RPQ02_RS32060 (RPQ02_32060) - 7184100..7185032 (+) 933 WP_313940050.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 29801.07 Da        Isoelectric Point: 5.9099

>NTDB_id=808705 RPQ02_RS32040 WP_313940046.1 7179765..7180592(-) (amiE) [Streptomyces sp. AM2-3-1]
MTDSAQTPPSAPVLEFRDLRVDFALASSTVHAVRGVNFSVTAGETLAVVGESGSGKSVTALSALRLNPEPPCVYAGGQVL
LDGKDVLALGEKELRKVRGARISMVFQDPMTSLDPLQRVGDQVAEVLRLHGDHTRSEARREALTALDEVGIPDPERRYGQ
YPHELSGGLRQRVMIASALVARPRLVIADEPTTALDVTVQRQILELLVRLQQRHGMAVLLITHDLGVVAETADRVVVMRH
GEVVETGDVEQVFTRPTASYTRDLLAATPRLEPVA

Nucleotide


Download         Length: 828 bp        

>NTDB_id=808705 RPQ02_RS32040 WP_313940046.1 7179765..7180592(-) (amiE) [Streptomyces sp. AM2-3-1]
ATGACCGACTCCGCACAGACCCCACCGTCCGCGCCCGTCCTCGAATTCCGGGACCTGCGTGTCGACTTCGCGCTCGCCTC
CTCGACCGTGCACGCGGTGCGCGGGGTGAACTTCTCGGTCACCGCCGGCGAGACCCTCGCCGTGGTCGGCGAGTCCGGCA
GCGGCAAGTCGGTCACCGCCCTGTCCGCGCTGCGCCTCAACCCCGAACCCCCGTGCGTGTACGCGGGCGGCCAGGTGCTG
CTCGACGGCAAGGACGTACTCGCCCTGGGGGAGAAGGAGTTGCGCAAGGTCCGCGGCGCCCGGATATCCATGGTCTTCCA
GGACCCGATGACCAGCCTCGATCCGTTGCAGCGGGTGGGCGACCAGGTCGCCGAGGTACTGCGGCTGCACGGCGACCACA
CCCGCAGCGAGGCCCGCCGGGAGGCGCTGACGGCGCTGGACGAGGTCGGCATCCCCGACCCGGAACGGCGCTACGGCCAG
TACCCGCACGAACTGTCCGGCGGCCTGCGCCAGCGCGTCATGATTGCCTCCGCGCTCGTGGCCCGGCCCCGCCTCGTCAT
CGCCGACGAGCCCACCACCGCGCTCGACGTGACAGTGCAGCGGCAGATCCTGGAGCTGCTCGTACGGCTCCAGCAACGCC
ATGGCATGGCCGTCCTGCTGATCACCCACGACCTGGGCGTCGTCGCGGAGACCGCCGACCGTGTCGTCGTCATGCGGCAC
GGCGAGGTCGTCGAGACCGGCGATGTGGAGCAGGTCTTCACGCGCCCCACCGCCTCGTACACACGCGATCTGCTGGCCGC
CACTCCCCGACTGGAGCCCGTCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(34-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

46.154

94.545

0.436
  amiE Streptococcus thermophilus LMD-9

46.154

94.545

0.436
  amiE Streptococcus salivarius strain HSISS4

46.154

94.545

0.436
  oppD Streptococcus mutans UA159

46.304

93.455

0.433
  amiF Streptococcus salivarius strain HSISS4

38.06

97.455

0.371