Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RPQ02_RS27860 Genome accession   NZ_CP135085
Coordinates   6211337..6213547 (+) Length   736 a.a.
NCBI ID   WP_313939371.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6206337..6218547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS27840 (RPQ02_27840) - 6206744..6207715 (+) 972 WP_030978740.1 thiamine-phosphate kinase -
  RPQ02_RS27845 (RPQ02_27845) thiD 6207758..6208570 (+) 813 WP_313939369.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RPQ02_RS27850 (RPQ02_27850) rpmB 6208654..6208839 (-) 186 WP_030928661.1 50S ribosomal protein L28 -
  RPQ02_RS27855 (RPQ02_27855) - 6209098..6210735 (+) 1638 WP_313939370.1 DAK2 domain-containing protein -
  RPQ02_RS27860 (RPQ02_27860) recG 6211337..6213547 (+) 2211 WP_313939371.1 ATP-dependent DNA helicase RecG Machinery gene
  RPQ02_RS27865 (RPQ02_27865) rsmD 6213732..6214316 (+) 585 WP_313939372.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RPQ02_RS27870 (RPQ02_27870) coaD 6214343..6214822 (+) 480 WP_313941690.1 pantetheine-phosphate adenylyltransferase -
  RPQ02_RS27875 (RPQ02_27875) - 6214921..6216024 (+) 1104 WP_313939373.1 ATP synthase F0 subunit B -
  RPQ02_RS27880 (RPQ02_27880) - 6216179..6216847 (+) 669 WP_030978751.1 YceD family protein -
  RPQ02_RS27885 (RPQ02_27885) rpmF 6216850..6217023 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  RPQ02_RS27890 (RPQ02_27890) rnc 6217043..6217870 (+) 828 WP_313939374.1 ribonuclease III -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 80055.66 Da        Isoelectric Point: 5.9270

>NTDB_id=808690 RPQ02_RS27860 WP_313939371.1 6211337..6213547(+) (recG) [Streptomyces sp. AM2-3-1]
MDRVSAFDEPLKKLLGGATAKVMAEHLDLHTVGDLLHHYPRRYEERGKLTALADLPLDEHVTVVAQVADARIMMFNNGKG
KRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKMQLAHPTYQLLDATDADEATEAVDAFAGKLLP
IYPACKQLDSWRIAKAVDTVLPSARDAVDPLPPSLREGRGFTPLPEALLKIHRPQTKADIAEARDRLKWDEAFVLQVALA
RRRYADTQLPAVARIPAHGGLLDAFDAKLPFTLTEGQEKVSKEIFDDLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDA
GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDLGTKVVLLTGSMGMAARRQALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDK
PHFLTRAWERVREEVENGHQAYVVCPRIGDDADDESEKKKGKKQQPEDDGDKRPPLAVLEIAEQLTEGALAGLRIAVLHG
RMNPDDKDDVMRRFAAGQVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEAHEASP
ARARLSSVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVAVVAADPELTDLPELRTA
LDALLDKEREEYLDKG

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=808690 RPQ02_RS27860 WP_313939371.1 6211337..6213547(+) (recG) [Streptomyces sp. AM2-3-1]
ATGGATCGCGTGTCTGCGTTCGACGAACCCCTCAAGAAGCTGCTCGGCGGTGCCACCGCGAAGGTGATGGCCGAACACCT
CGACCTGCATACGGTCGGTGATCTGCTGCACCACTACCCGCGGCGGTACGAGGAGCGCGGCAAGCTGACCGCACTGGCCG
ACCTCCCGCTGGACGAGCATGTGACCGTCGTCGCACAGGTCGCCGACGCCCGGATCATGATGTTCAACAACGGCAAGGGC
AAACGCCTGGAGGTGACCCTCACCGACGGCAGTGGCCGGCTCCAACTGGTCTTCTTCGGCCATGGCGTGCACAAGCCGCA
CAAGGAGCTGCTGCCCGGGCGCCGGGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGGAAGATGCAGCTCGCCCACC
CCACCTACCAGCTGCTCGACGCCACGGACGCCGACGAGGCCACGGAGGCGGTGGACGCCTTCGCCGGGAAGCTGCTGCCC
ATCTATCCGGCCTGCAAGCAGCTCGACTCCTGGCGGATCGCCAAGGCCGTCGACACCGTGCTGCCCAGCGCCCGGGACGC
CGTCGACCCGCTGCCGCCCTCCCTGCGCGAGGGGCGTGGCTTCACCCCGTTGCCCGAGGCGCTGCTGAAGATCCACCGTC
CGCAGACCAAGGCGGACATCGCCGAGGCCAGGGACCGGCTGAAGTGGGACGAGGCGTTCGTCCTCCAGGTCGCGCTCGCC
CGCCGCCGGTACGCGGACACCCAGCTACCGGCGGTGGCGCGGATCCCCGCCCACGGCGGACTGCTCGACGCATTCGACGC
CAAGCTGCCGTTCACCCTCACCGAGGGCCAGGAGAAGGTCTCCAAGGAGATCTTCGACGACCTGGCGACCGAGCACCCGA
TGCACCGGTTGCTGCAGGGCGAGGTCGGTTCCGGGAAGACGCTGGTCGCGCTGCGCGCCATGCTCGCCGTCGTCGACGCG
GGCGGACAGGCCGCGATGCTCGCCCCCACCGAGGTGCTGGCCCAGCAGCACCACCGGTCCATCACGGAAATGATGGGCGA
GCTGGCCGAAGGAGGAATGCTGGGTGGCTCCGACCTCGGCACGAAGGTGGTGCTGCTCACCGGCTCCATGGGCATGGCGG
CCCGCCGTCAGGCGCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCATGCGCTGATCGAGGACAAG
GTGCAGTTCCATGACCTGGGACTGGTCGTGGTGGACGAGCAGCACCGCTTCGGTGTCGAGCAGCGTGACGCCCTGCGGTC
CAAGGGCAAGCAGCCGCCGCACCTGCTGGTCATGACCGCCACACCCATTCCCCGTACCGTCGCCATGACCGTCTTCGGTG
ACCTGGAGACGTCCGTGCTGGACCAGCTGCCGGCGGGCCGCTCGCCGATCGCCAGCCATGTCGTCCCCGCCAAGGACAAG
CCGCACTTCCTCACCCGCGCCTGGGAGCGGGTACGCGAGGAGGTGGAGAACGGCCACCAGGCGTATGTCGTATGCCCCCG
GATCGGTGACGACGCCGACGACGAGTCCGAGAAGAAGAAGGGGAAGAAGCAGCAGCCCGAGGACGACGGCGACAAGCGCC
CGCCGCTCGCCGTCCTGGAGATCGCCGAGCAGCTCACCGAGGGAGCCCTCGCCGGTCTGCGCATCGCGGTGCTGCACGGC
AGGATGAACCCCGACGACAAGGACGACGTGATGCGCCGCTTCGCCGCGGGCCAGGTCGACGTCCTCGTCGCGACGACCGT
CATCGAGGTCGGGGTGAACGTCCCCAACGCCACCGCGATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGCTAC
ACCAACTGCGCGGCCGCGTCGGCCGTGGCTCCGCCGCCGGTCTCTGCCTGCTGGTCAGCGAGGCGCACGAGGCGAGCCCC
GCCCGGGCCCGTCTGTCCTCCGTCGCCGCCACCCTCGACGGCTTCGAACTGTCCCGGATCGACCTCGAACAGCGCCGTGA
GGGCGATGTCCTCGGCCAGGCCCAGTCCGGTGTCCGCTCGTCCCTGCGGATGCTCACCGTCATCGATGACGAGGAGGTCA
TCGCCGCCGCCCGCGAGGAGGCCGTCGCCGTCGTCGCCGCGGACCCGGAGCTGACAGATCTGCCCGAGCTGCGCACCGCC
CTGGACGCACTGCTCGACAAGGAGCGCGAGGAGTACCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(295-447)

Helicase conserved C-terminal domain (Helicase_C)

(545-623)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(651-712)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.054

94.973

0.361