Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RPQ02_RS25355 Genome accession   NZ_CP135085
Coordinates   5637282..5638340 (+) Length   352 a.a.
NCBI ID   WP_313939010.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5632282..5643340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS25340 (RPQ02_25340) - 5633594..5635234 (+) 1641 WP_313939007.1 peptide ABC transporter substrate-binding protein -
  RPQ02_RS25345 (RPQ02_25345) - 5635401..5636333 (+) 933 WP_313939008.1 ABC transporter permease -
  RPQ02_RS25350 (RPQ02_25350) - 5636326..5637270 (+) 945 WP_313939009.1 ABC transporter permease -
  RPQ02_RS25355 (RPQ02_25355) amiE 5637282..5638340 (+) 1059 WP_313939010.1 ABC transporter ATP-binding protein Regulator
  RPQ02_RS25360 (RPQ02_25360) - 5638333..5639475 (+) 1143 WP_313939011.1 ABC transporter ATP-binding protein -
  RPQ02_RS25365 (RPQ02_25365) - 5639674..5640762 (-) 1089 WP_313939012.1 ABC transporter ATP-binding protein -
  RPQ02_RS25370 (RPQ02_25370) - 5640789..5641814 (-) 1026 WP_313939013.1 ABC transporter ATP-binding protein -
  RPQ02_RS25375 (RPQ02_25375) - 5641826..5642806 (-) 981 WP_030915235.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38573.56 Da        Isoelectric Point: 6.1782

>NTDB_id=808679 RPQ02_RS25355 WP_313939010.1 5637282..5638340(+) (amiE) [Streptomyces sp. AM2-3-1]
MTTIDKTAEVPSPRSGDDHVGPLLEVRDLHVEFHTRDGVVKAVNGVNYSVDAGETLAVLGESGSGKSVTAQAIMGILDMP
PGKIPQGEILFRGQDMLKMSYEERRQIRGQKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGMSKKDAQAKAIDLMDQVK
IPAAKARVSDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETSPVHEIYKRPAHPYTKGLLESIPRLDQKGQELFAIKGLPPNLLRVPTGCAFNPRCTMAQDICRT
DIPALRPVTEQDGTELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=808679 RPQ02_RS25355 WP_313939010.1 5637282..5638340(+) (amiE) [Streptomyces sp. AM2-3-1]
GTGACTACCATCGACAAGACCGCCGAAGTCCCGTCCCCGCGCTCGGGTGACGACCACGTCGGCCCGCTGCTCGAAGTCCG
TGACCTGCACGTGGAGTTCCACACCCGGGACGGCGTGGTCAAGGCCGTCAACGGCGTGAACTACAGCGTGGACGCAGGAG
AGACGCTCGCCGTTCTCGGTGAGTCCGGCTCCGGCAAGTCCGTGACGGCGCAGGCCATCATGGGCATCCTCGACATGCCG
CCGGGCAAGATCCCCCAGGGGGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCTACGAGGAGCGTCGGCAGAT
CCGTGGCCAGAAGATCGCGATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTCCACCAGGGCATGTCCAAGAAGGACGCGCAGGCCAAGGCCATCGACCTGATGGACCAGGTCAAG
ATCCCGGCCGCCAAGGCCCGGGTCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGTCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACCGTGCAGGCCCAGGTGA
TGGACCTCCTCGCGGAGCTCCAGCGCGAGTACAACATGGGTCTCATCCTGATCACCCACGACCTCGGTGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCTCCCCGGTCCACGAGATCTACAAGCGCCCGGC
ACACCCGTACACCAAGGGTCTGCTGGAGTCGATCCCGCGGCTGGACCAGAAGGGCCAGGAGCTCTTCGCGATCAAGGGCC
TGCCGCCCAACCTGCTCCGCGTGCCCACGGGTTGTGCCTTCAACCCGCGCTGCACGATGGCACAGGACATCTGCCGTACG
GACATCCCGGCTCTGCGCCCGGTGACCGAGCAGGACGGCACCGAGCTGGTCGGCCGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

52.365

84.091

0.44
  amiE Streptococcus thermophilus LMG 18311

51.689

84.091

0.435
  amiE Streptococcus thermophilus LMD-9

51.689

84.091

0.435
  oppD Streptococcus mutans UA159

48.377

87.5

0.423