Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ02_RS23240 Genome accession   NZ_CP135085
Coordinates   5173569..5174204 (+) Length   211 a.a.
NCBI ID   WP_313938716.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5168569..5179204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS23215 (RPQ02_23215) - 5169217..5169795 (-) 579 WP_313938711.1 suppressor of fused domain protein -
  RPQ02_RS23220 (RPQ02_23220) - 5169987..5170193 (+) 207 WP_313938712.1 hypothetical protein -
  RPQ02_RS23225 (RPQ02_23225) - 5170407..5171093 (-) 687 WP_313938713.1 ABC transporter ATP-binding protein -
  RPQ02_RS23230 (RPQ02_23230) - 5171090..5172178 (-) 1089 WP_313938714.1 ABC transporter permease -
  RPQ02_RS23235 (RPQ02_23235) - 5172352..5173572 (+) 1221 WP_313938715.1 sensor histidine kinase -
  RPQ02_RS23240 (RPQ02_23240) vraR 5173569..5174204 (+) 636 WP_313938716.1 response regulator transcription factor Regulator
  RPQ02_RS23245 (RPQ02_23245) - 5174418..5175017 (-) 600 WP_313938717.1 hypothetical protein -
  RPQ02_RS23250 (RPQ02_23250) - 5175786..5176409 (+) 624 WP_313938718.1 hypothetical protein -
  RPQ02_RS23255 (RPQ02_23255) - 5176399..5177391 (-) 993 WP_313938719.1 aldo/keto reductase -
  RPQ02_RS23260 (RPQ02_23260) - 5177976..5178536 (-) 561 WP_313938720.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22113.28 Da        Isoelectric Point: 4.9238

>NTDB_id=808676 RPQ02_RS23240 WP_313938716.1 5173569..5174204(+) (vraR) [Streptomyces sp. AM2-3-1]
MTDTPIRLLLADDHPVVRAGLRAVLETEPGLVVMAEAATAEDAVTRAAEGDIDVVLMDLQFGKGMGGAEATARITARPGA
PRVLIVTTYDSDADTLPAIEAGATGYLLKDAPPEELAAAVRTAATGRTTLAPTVADRLMNRLRAPGTALTRRETEVLALV
ADGLSNQAIGDRLHLTEGTVKSHLARIYVKLDVDSRTAAVATATDLGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=808676 RPQ02_RS23240 WP_313938716.1 5173569..5174204(+) (vraR) [Streptomyces sp. AM2-3-1]
GTGACCGACACCCCCATCCGCCTGCTCCTGGCCGACGACCACCCCGTCGTACGGGCCGGGCTGCGCGCCGTGCTCGAAAC
CGAGCCCGGCCTCGTCGTCATGGCCGAAGCCGCCACAGCCGAGGACGCCGTCACCCGCGCCGCCGAAGGCGACATCGACG
TTGTGCTGATGGACCTGCAGTTCGGCAAAGGCATGGGGGGCGCCGAAGCCACCGCCCGGATCACCGCCCGGCCGGGAGCC
CCCCGCGTGCTGATCGTCACCACTTACGACTCCGACGCCGACACGTTGCCCGCCATCGAAGCCGGCGCCACCGGCTACCT
CCTCAAGGACGCCCCGCCCGAGGAGCTGGCCGCCGCCGTACGCACCGCAGCCACCGGACGCACCACGTTGGCGCCCACGG
TCGCCGACCGGCTGATGAACCGGCTACGCGCCCCCGGCACCGCCCTGACCCGGCGCGAGACCGAAGTCCTCGCCCTGGTC
GCCGACGGCCTGTCCAACCAGGCCATCGGCGACCGCCTCCACCTGACCGAAGGAACGGTCAAGTCCCACCTGGCCCGCAT
CTATGTCAAGCTCGATGTCGACTCACGCACCGCCGCCGTCGCCACCGCCACCGACCTCGGCCTCATCCGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-120)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.538

98.578

0.36