Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RPQ02_RS10680 Genome accession   NZ_CP135085
Coordinates   2355281..2358304 (-) Length   1007 a.a.
NCBI ID   WP_313936731.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2350281..2363304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS10660 (RPQ02_10660) rapZ 2350297..2351313 (-) 1017 WP_313936728.1 RNase adapter RapZ -
  RPQ02_RS10665 (RPQ02_10665) uvrC 2351310..2353346 (-) 2037 WP_313936729.1 excinuclease ABC subunit UvrC -
  RPQ02_RS10670 (RPQ02_10670) - 2353642..2354568 (+) 927 WP_313936730.1 hypothetical protein -
  RPQ02_RS10675 (RPQ02_10675) - 2354610..2355035 (-) 426 WP_030974717.1 Rieske (2Fe-2S) protein -
  RPQ02_RS10680 (RPQ02_10680) uvrA 2355281..2358304 (-) 3024 WP_313936731.1 excinuclease ABC subunit UvrA Machinery gene
  RPQ02_RS10685 (RPQ02_10685) - 2358480..2359169 (+) 690 WP_313936732.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  RPQ02_RS10690 (RPQ02_10690) - 2359180..2359836 (+) 657 WP_313936733.1 MBL fold metallo-hydrolase -
  RPQ02_RS10695 (RPQ02_10695) - 2359886..2360887 (-) 1002 WP_313936734.1 TerC family protein -
  RPQ02_RS10700 (RPQ02_10700) - 2361141..2363117 (-) 1977 WP_313936735.1 TerD family protein -

Sequence

Protein


Download         Length: 1007 a.a.        Molecular weight: 110651.15 Da        Isoelectric Point: 7.9934

>NTDB_id=808649 RPQ02_RS10680 WP_313936731.1 2355281..2358304(-) (uvrA) [Streptomyces sp. AM2-3-1]
MVDRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDKVLALPEGSRFQVLSPLVRERK
GEFVDLFSDLQTKGYSRARVDGETIHLAEPPKLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGALADALGFRTDIPWAGLPQRAKKALLHGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHSEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAQVSAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLRFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGRVVHSGSLKELLANDESITGHYLVGKKSIPMPDIRRPADPTRRLTVRGARENNLQDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLHEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVL
SGLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGNGGGLVVAEGTPEQVAMVPASHTGKFLQGVLDPVRVSEAAVPAARK
PVRKAAAKTVAAKSSPVRKTATAKTASGTAAAAKKPAAKKATRTRKA

Nucleotide


Download         Length: 3024 bp        

>NTDB_id=808649 RPQ02_RS10680 WP_313936731.1 2355281..2358304(-) (uvrA) [Streptomyces sp. AM2-3-1]
GTGGTCGACCGTCTCATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTCCCCCGCGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCATCACTGGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGAT
ACGTGGAGTCGCTCTCCTCGTACGCCAGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGATTTCATCGAGGGCCTC
TCGCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACGATCACCGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAACCGCACTGTCCCGAGTGCGGCCGGCCGATCTCCCGTCAGTCGCCGC
AGGCCATCGTCGACAAGGTGCTCGCCCTGCCCGAGGGCAGCCGCTTCCAGGTGCTGTCACCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCTCCGATCTGCAGACCAAGGGCTACAGCAGGGCCAGGGTCGACGGCGAGACCATCCACCT
CGCCGAGCCGCCCAAGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTGAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTCGAGACCGCGCTCGGTCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCGGAGGACGACCCCGAGCGTGAGCGGATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACGGGTATCGGTACGCGGATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGAGAAGTCCCTCGACGAGGGCGCGATCCACCCCTGGTCGCACGGTCACACCAAG
GAGTACTTCGGGCGGCTGATCGGCGCCCTCGCCGACGCCCTCGGATTCCGTACGGACATCCCGTGGGCCGGACTGCCGCA
GCGCGCGAAGAAGGCCCTGCTGCACGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGCTACGGGCGCGAGCGCG
CCTACACCACCCCGGCCTTCGAGGGCGCGGTGCAGTTCGTCAAGCGGCGGCACTCCGAGGCCGAGAGCGACTCCAGCCGG
GAGCGCTTCGAGGGCTATATGCGCGAGGTGCCCTGCCCGACCTGTGAGGGCACGAGGCTGAAGCCGATCGTCCTCGCGGT
GACGGTGATGGAGAAGTCCATTGCACAGGTCTCCGCGATGTCGATCAGCGAGTGCGCCGAATTCCTCGGCCGGTTGAAGC
TGAACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTGAAGGAGGTCAACGAGCGGCTGAGGTTCCTGGTCGACGTCGGC
CTCGACTACCTCTCGCTCAACCGCGCGGCAGGCACCCTGTCCGGCGGCGAGGCGCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGCCTCGTCGGCGTGCTGTACGTGCTGGACGAGCCGTCCATCGGGCTGCACCAGCGCGACAACCATCGGCTGA
TCGAGACCCTGGTCCGCCTCCGTGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAGGGTGGTCCACTCCGGATCGCTCAAGGAGCTGCT
GGCCAACGACGAGTCGATCACCGGTCACTACCTGGTCGGCAAGAAGTCCATTCCGATGCCCGACATCCGGCGCCCGGCCG
ACCCGACCCGTCGGCTCACGGTGCGCGGAGCTCGCGAGAACAACCTCCAGGACATCGACGTCTCGTTCCCGCTCGGTGTA
CTCACGGCGGTCACCGGTGTCTCGGGCTCGGGCAAGTCGACGCTGGTCAACGACATCCTCTACACCCACCTGGCGCGCGA
GCTGAACGGCGCCAAGTCGGTTCCCGGCCGGCACACCCGGGTCGACGGCGACGACCTGGTCGACAAGGTGGTGCACGTCG
ACCAGTCGCCGATCGGCCGGACACCCCGGTCCAACCCGGCGACGTACACCGGCGTCTTCGATCATGTCCGCAAGCTGTTC
GCCGAGACGATGGAGGCGAAGGTACGCGGTTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGACGTGTACGTCCCGTGCGAGGTCTGTCACGGGG
CGCGGTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GGTCTGGAGTTCTTCGAGGCCGTCCCGACGATCGCCCGCCATCTCCGTACGCTCCACGAGGTGGGCCTCGGATACGTCAG
GCTCGGCCAGTCCGCGCCGACGCTCTCCGGCGGTGAGGCGCAGCGCGTGAAGCTCGCGAGCGAGCTGCAGAAGCGCTCCA
CCGGCCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGACTGCACTTCGAGGACATCAGCAAGCTCATCAAGGTGCTG
TCCGGGTTGGTCGACAAGGGCAACTCGGTGATTGTCATCGAGCACAACCTCGATGTCATCAAGACCGCGGACTGGGTCAT
CGACATGGGCCCGGAGGGTGGCAACGGCGGTGGTCTGGTCGTCGCCGAAGGCACACCGGAGCAGGTCGCCATGGTCCCGG
CGAGCCACACCGGCAAGTTCCTGCAGGGCGTCCTGGACCCGGTCCGGGTGAGCGAGGCGGCAGTGCCGGCGGCACGCAAG
CCGGTACGGAAGGCGGCGGCGAAGACGGTGGCCGCCAAGTCGTCCCCGGTGAGGAAGACGGCGACGGCGAAGACGGCTTC
GGGCACGGCGGCTGCGGCGAAGAAGCCCGCGGCGAAGAAGGCGACGCGCACGCGCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.164

94.24

0.529
  uvrA Streptococcus pneumoniae TIGR4

56.164

94.24

0.529
  uvrA Streptococcus pneumoniae D39

56.164

94.24

0.529