Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RBJ50_RS13940 Genome accession   NZ_CP135077
Coordinates   2830695..2831324 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 19213     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2825695..2836324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBJ50_RS13925 (RBJ50_13925) helD 2825937..2827991 (-) 2055 WP_001295354.1 DNA helicase IV -
  RBJ50_RS13930 (RBJ50_13930) yccF 2828114..2828560 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RBJ50_RS13935 (RBJ50_13935) yccS 2828570..2830732 (+) 2163 WP_000875061.1 YccS family putative transporter -
  RBJ50_RS13940 (RBJ50_13940) sxy/tfoX 2830695..2831324 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RBJ50_RS13945 (RBJ50_13945) sulA 2831543..2832052 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RBJ50_RS13950 (RBJ50_13950) ompA 2832409..2833449 (+) 1041 WP_000750416.1 porin OmpA -
  RBJ50_RS13955 (RBJ50_13955) matP 2833525..2833977 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RBJ50_RS13960 (RBJ50_13960) ycbZ 2834163..2835923 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=808601 RBJ50_RS13940 WP_000839153.1 2830695..2831324(-) (sxy/tfoX) [Escherichia coli strain 19213]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=808601 RBJ50_RS13940 WP_000839153.1 2830695..2831324(-) (sxy/tfoX) [Escherichia coli strain 19213]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1