Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RBJ50_RS01935 Genome accession   NZ_CP135077
Coordinates   417079..417756 (-) Length   225 a.a.
NCBI ID   WP_000178154.1    Uniprot ID   P25960
Organism   Escherichia coli strain 19213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412079..422756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBJ50_RS01920 (RBJ50_01920) chiA 413446..416139 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  RBJ50_RS01925 (RBJ50_01925) bfd 416308..416502 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  RBJ50_RS01930 (RBJ50_01930) bfr 416574..417050 (+) 477 WP_000675504.1 bacterioferritin -
  RBJ50_RS01935 (RBJ50_01935) pilD 417079..417756 (-) 678 WP_000178154.1 prepilin peptidase GspO Machinery gene
  RBJ50_RS01940 (RBJ50_01940) gspM 417756..418217 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  RBJ50_RS01945 (RBJ50_01945) gspL 418214..419377 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  RBJ50_RS01950 (RBJ50_01950) gspK 419392..420375 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  RBJ50_RS01955 (RBJ50_01955) gspJ 420368..420955 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  RBJ50_RS01960 (RBJ50_01960) gspI 420948..421325 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  RBJ50_RS01965 (RBJ50_01965) gspH 421322..421831 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  RBJ50_RS01970 (RBJ50_01970) gspG 421839..422276 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24956.82 Da        Isoelectric Point: 7.6353

>NTDB_id=808566 RBJ50_RS01935 WP_000178154.1 417079..417756(-) (pilD) [Escherichia coli strain 19213]
MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=808566 RBJ50_RS01935 WP_000178154.1 417079..417756(-) (pilD) [Escherichia coli strain 19213]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGATTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P25960

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378