Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RMQ62_RS08980 Genome accession   NZ_CP135065
Coordinates   1855213..1855863 (+) Length   216 a.a.
NCBI ID   WP_024384330.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850213..1860863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS08970 (RMQ62_08970) - 1851846..1852931 (-) 1086 WP_024376342.1 Xaa-Pro peptidase family protein -
  RMQ62_RS08975 (RMQ62_08975) ccpA 1853141..1854145 (+) 1005 WP_004298830.1 catabolite control protein A Regulator
  RMQ62_RS08980 (RMQ62_08980) scnR 1855213..1855863 (+) 651 WP_024384330.1 response regulator transcription factor Regulator
  RMQ62_RS08985 (RMQ62_08985) - 1855864..1857225 (+) 1362 WP_024384329.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24594.72 Da        Isoelectric Point: 4.9774

>NTDB_id=808543 RMQ62_RS08980 WP_024384330.1 1855213..1855863(+) (scnR) [Streptococcus suis strain ID24665]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFDGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=808543 RMQ62_RS08980 WP_024384330.1 1855213..1855863(+) (scnR) [Streptococcus suis strain ID24665]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGTGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTGACGGTGGACAGGCATTAGAAGAAATCCAGAAAATGGAATTTGATCTGCTTATTTTGGATATTA
TGGTGCCGACGATGACAGGATTGGAGTTATTGACAGCAGTTCGGAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCT
TTAAGTGATGAGTATACTCAATTAATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTTTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGAATAGGTGACATCCTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATATTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.937

100

0.38