Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RMQ62_RS07815 Genome accession   NZ_CP135065
Coordinates   1613409..1616234 (+) Length   941 a.a.
NCBI ID   WP_313741768.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1608409..1621234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS07800 (RMQ62_07800) - 1608895..1610097 (-) 1203 WP_313741767.1 IS110 family transposase -
  RMQ62_RS07805 (RMQ62_07805) - 1610490..1611146 (-) 657 WP_024406583.1 DUF1129 domain-containing protein -
  RMQ62_RS07810 (RMQ62_07810) - 1611162..1612106 (-) 945 WP_002939248.1 magnesium transporter CorA family protein -
  RMQ62_RS07815 (RMQ62_07815) uvrA 1613409..1616234 (+) 2826 WP_313741768.1 excinuclease ABC subunit UvrA Machinery gene
  RMQ62_RS07820 (RMQ62_07820) - 1616260..1616433 (-) 174 WP_162841172.1 YlcI/YnfO family protein -
  RMQ62_RS07825 (RMQ62_07825) - 1616565..1617410 (+) 846 WP_313741769.1 DUF4839 domain-containing protein -
  RMQ62_RS07830 (RMQ62_07830) - 1617495..1618556 (+) 1062 WP_029171000.1 Xaa-Pro peptidase family protein -
  RMQ62_RS07835 (RMQ62_07835) efp 1618620..1619177 (+) 558 WP_002942436.1 elongation factor P -
  RMQ62_RS07840 (RMQ62_07840) - 1619205..1619597 (+) 393 WP_002942446.1 Asp23/Gls24 family envelope stress response protein -
  RMQ62_RS07845 (RMQ62_07845) nusB 1619587..1620006 (+) 420 WP_002938276.1 transcription antitermination factor NusB -
  RMQ62_RS07850 (RMQ62_07850) - 1620086..1621051 (-) 966 WP_002938271.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103904.08 Da        Isoelectric Point: 6.0560

>NTDB_id=808537 RMQ62_RS07815 WP_313741768.1 1613409..1616234(+) (uvrA) [Streptococcus suis strain ID24665]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKEGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKDGIRSRLFDSIEAALRIADGYVIIDTMDE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLEVIENLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLDRRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKTISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVAQNPASFTGQYLKMKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=808537 RMQ62_RS07815 WP_313741768.1 1613409..1616234(+) (uvrA) [Streptococcus suis strain ID24665]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTAAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTTGATACCTTGTATGCCGAAGGTCAACGCCGTT
ATGTAGAGTCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAACCGGATGTGGATTCCATAGAGGGGCTC
AGCCCTGCTATTTCCATAGACCAAAAAACAACCTCGCGTAACCCGCGTTCGACGGTTGGAACGGCAACGGAAATCAATGA
CTATCTCCGCCTGCTTTATGCTCGGGTCGGGGTACCTTACTGTATCAATGGTCATGGTGCAATTGCGGCTTCTTCGGTGG
AGCAGATCGTCGATGAGGTCTTGGAATTGCCAGAACGCCAGCGTTTGCAGATTTTAGCTCCGATTGTTCGTAAGAAAAAG
GGGCAACACAAGACCATTTTTGAAAAAGTGCAGAAGGAGGGCTATGTTCGGGTCCGTGTCAATGGCGATGTCTATGATGT
GTCGGAAGTGCCTGAGTTGTCCAAGAGCAAGGCTCATAACATTGAGGTCGTGGTCGATCGGATTGTGATCAAAGATGGCA
TTCGCTCGCGGCTTTTTGACTCCATTGAGGCGGCCCTGCGGATTGCGGACGGTTATGTCATCATCGATACCATGGATGAG
AAGGAACTGCTTTTCTCCGAGTACTATGCCTGTCCAGTTTGTGGCTTTACGGTGCCTGAGTTGGAGCCTCGCCTCTTTTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGACTGTGACGGTTTGGGCATGAAGCTGGAAGTGGATACGGATTTGATTGTCC
CAGATGCCAGCAAGACCTTGCGTGAGGGTGCTTTGGCTCCTTGGAATCCAATCTCTTCCAACTACTACCCTCAGATGTTG
GAGCAAGCTATGAACCACTTTGGTGTGGACATGGACAAGCCTTTCGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAATGGTTCTGACGGGAAAGAATTCCATTTCCATTATGAAAATGAGTTCGGTGGGGTCCGAGACATCGATATTCCATTCG
AGGGCTTGATTACCAACATTAACCGCCGCTACCGTGAAACCAATAGTGATTACACACGGACAGTGATGAAGACTTACATG
AATGAGTTGACCTGTGGGACCTGCCACGGCTATCGCCTCAATGACCAAGCTCTGTCTGTTAAAGTCGGTGGCGAGCAGGG
ACTTCATATCGGGCAGCTGTCTGACTTGTCCGTGGCGGATCATCTTGAAGTCATTGAAAATCTGACCTTGTCTGAAAATG
AAGCAACCATTGCGACACCGATTGTCAAGGAAATCAAGGACCGCCTGTCCTTCCTTAATAACGTTGGTCTCAACTATCTG
ACCCTTTCACGAGCTGCAGGAACCCTTTCTGGTGGTGAGAGTCAGCGGATTCGTCTGGCGACTCAGATTGGCTCTAACCT
GTCTGGTGTTCTTTACATCTTGGATGAGCCGTCGATTGGTCTGCACCAGCGGGATAATGACCGCCTGATTGCTAGTCTTA
AGAAAATGCGTGATTTGGGCAATACCTTGATCGTGGTGGAGCATGATGAGGACACTATGCGTGAGGCGGACTGGTTGATT
GACATTGGTCCAGGTGCGGGTGTCTTTGGTGGAGAAATTGTGGCTTCTGGAACGCCTGCCCAAGTTGCTAAAAACAAGAA
ATCCATTACAGGCCAGTACCTGTCTGGCAAACGTGAAATTCCGGTGCCTCTAGACCGCCGTGTCGGAAATGGTCGTTTCC
TAGAGGTAACCGGTGCTAAGGAAAACAACCTGCAAGATGTGACGGTCCGTTTCCCACTCGGAAAATTTGTGGCGGTGACA
GGGGTGTCTGGCTCTGGTAAGTCAACTCTGGTCAACTCCATTTTGAAAAAAGCCATTGCTCAGAAGCTCAATCGCAATTC
GGACAAGCCAGGCAAGTTCAAAACCATTTCAGGAATTGAACACTTGGACCGCCTGATTGACATAGACCAAAGCCCGATCG
GACGGACACCACGTTCCAACCCAGCCACCTACACAGGTGTCTTTGACGATATTCGTGACCTCTTTGCCCAGACCAATGAA
GCCAAAATCCGTGGCTATAAGAAGGGGCGATTCTCCTTTAACGTCAAAGGTGGTCGTTGCGAAGCCTGCTCTGGTGACGG
GATTATCAAGATTGAAATGCACTTCCTGCCAGATGTTTTTGTACCTTGTGAAGTTTGTCATGGCCACCGCTACAACTCGG
AAACCTTGGAAGTACACTACAAGGAGAAAAATATCGCTCAGGTCCTTGATATGACGGTCAATGATGCGGTAGAATTCTTC
AAACACATTCCAAAAATCGAACGCAAGCTCCGCACCATTCAAGATGTGGGCTTGGGTTATGTTACTCTTGGACAACCTGC
GACAACCCTGTCAGGCGGGGAAGCTCAGCGGATGAAATTGGCTTCTGAACTCCACAAGCGGTCAACTGGTAAGTCTTTGT
ATATCTTGGACGAGCCAACGACTGGCCTACATACTGAGGACATTGCTCAATTGCTCAAGGTCTTGGCCCGATTTGTCGAT
GACGGCAATACTGTCCTTGTCATCGAGCACAATCTGGATGTGATTAAGACAGCTGACCATATTATCGACATGGGGCCAGA
AGGCGGTGTCGGTGGTGGTACCGTTGTCGCGACAGGAACGCCAGAAGAAGTGGCTCAAAATCCAGCCAGCTTTACAGGAC
AGTATCTGAAAATGAAATTGAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.255

99.894

0.892
  uvrA Streptococcus pneumoniae TIGR4

89.255

99.894

0.892
  uvrA Streptococcus pneumoniae D39

89.255

99.894

0.892