Detailed information NTG0080852

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: TSUB_RS14040
• Genome accession: NZ_AP023054
• Coordinates: 3152321..3155698 (+)
• Length: 1125 a.a.
• NCBI ID: WP_087022209.1
• Uniprot ID: -
• Organism: Thaumasiovibrio subtropicus strain C4V358
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3147321..3160698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TSUB_RS14020	erpA	3147872..3148213 (-)	342	WP_087022197.1	iron-sulfur cluster insertion protein ErpA	-
TSUB_RS14025	hemL	3148464..3149753 (+)	1290	WP_087022199.1	glutamate-1-semialdehyde 2,1-aminomutase	-
TSUB_RS14030	-	3149920..3151005 (+)	1086	WP_087022202.1	AI-2E family transporter	-
TSUB_RS14035	rsmC	3151093..3152118 (+)	1026	WP_087022205.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
TSUB_RS14040	chiS	3152321..3155698 (+)	3378	WP_087022209.1	response regulator	Regulator
TSUB_RS14045	-	3156545..3158215 (+)	1671	WP_087022212.1	ABC transporter substrate-binding protein	-
TSUB_RS14050	-	3158345..3159331 (+)	987	WP_087022215.1	ABC transporter permease	-
TSUB_RS14055	-	3159334..3160392 (+)	1059	WP_087022218.1	ABC transporter permease	-

Sequence

Protein

• Length: 1125 a.a.
• Molecular weight: 127094.51 Da
• Isoelectric Point: 4.8140

>NTDB_id=80852 TSUB_RS14040 WP_087022209.1 3152321..3155698(+) (chiS) [Thaumasiovibrio subtropicus strain C4V358]
MKLFRSFNRLQHVLMMAFLVISITPLTLTALFFLNSHISDLENQTFNHLTLLRDNKSRQIERYFDNKKQEAQAFASSELA
NASGGRFYGLIGAFNQLANTEEDARDIAQSDYIKGVLTGKEVDLSTEGNLYIANQRYRLIHKRYHTAFEDYLSRSEFKNI
YLVDINGNVGYSVTKDHLFGENLLEGEFAQTAPGQTFANIQAMTDKEDELESKGPFVFTDFSYDVNLKMNVAWLAAPVIQ
QGYLHSYILFKLPTTGMDQLIDEKVEELSYINTVLIGQDNVLRAHNLAEMPELPSMDYMAALVNKSAQVERLNSLSGLPV
LSAYTPVDILGNPWILMVELPEKEAFAHIEQLEKVFLVAMTAAIVLVILVSHWLSNSITAPLLRLTWAAERVSAGDLDQD
IDGTDRPDEIGRLAISFARMQRSVREKLLLIREQNSELENNIQLIQQKNQELETADKLKDDFLATTSHELRTPLHGMIGI
AESLQAGINGPVPTQQLQQLQMIINSGQRLSNLVDDLLDYHKMRYGNLEMNQHAVDVSTAVRLVLELSQHLLGDKPVRII
NQIPNDLPLISADEQRLEQVLYNLVGNAIKYTTEGKIVLSADVLDNQVRVQVVDTGQGIPAEELEHIFEPLIQASTYSSR
YRQGTGLGLTISRQLIELMGGHLYVSSQPMVGATFSFTLNRATDEQKANSPALAHHFNAPQLENSAVEECQQEHENSDGD
LILVVDDEPVNLQIVTNYLRMSGYRVMTAEGGVQALALIEKEKPKALLLDVMMPELNGYEVCARLRANSETEALPIIMLS
ALSQPQDRIKGFEVGASDYLHKPFNKEELLARIHAHLRAARMLEEQEANQRLLSEIEHRKQVEQGLLDTQSKLLNLLEST
AEAIVCIQEDGRIRYANLAAAQLLNTPAEILERLNIQDYITDSSQLEQWGEVETLHFQLQGTLHSWPANLLPMPEASGLH
MMIVLSQMGPSNQYRVEMLENALQVLSEFAFDGDKSNLQQLRELGGEFTRLADKLSQDEKSKADLIRELSVKAMNECLVL
WEGNTGKTKFALAEESGLWRVYLDRSTLQTRTLDKYLHIDTLPKSPRWRTVLNTLNYVLDRVEQPSPERAQLESYRDKLH
HYMQH

Nucleotide

• Length: 3378 bp

>NTDB_id=80852 TSUB_RS14040 WP_087022209.1 3152321..3155698(+) (chiS) [Thaumasiovibrio subtropicus strain C4V358]
ATGAAACTCTTCAGATCTTTCAATCGCTTACAGCACGTGTTGATGATGGCATTTTTGGTGATCAGTATCACACCACTGAC
ACTGACTGCCCTGTTTTTCCTCAACTCGCACATCTCAGACCTCGAAAACCAGACCTTTAACCACCTCACCCTGCTTCGAG
ATAACAAATCTCGTCAAATCGAGCGCTATTTTGACAACAAAAAGCAAGAAGCACAGGCGTTCGCCAGTTCAGAGCTGGCC
AATGCCAGTGGCGGGCGGTTTTATGGTTTGATTGGCGCATTTAACCAACTCGCCAACACGGAAGAAGATGCGCGAGATAT
TGCGCAGAGTGATTACATTAAGGGCGTGCTCACCGGGAAAGAGGTCGATCTCAGCACGGAAGGTAATCTCTATATTGCTA
ACCAACGCTATCGCTTGATCCACAAACGCTATCACACCGCGTTTGAGGACTACCTCTCTCGCTCTGAATTTAAAAATATC
TATCTGGTCGACATAAACGGCAATGTTGGCTATTCGGTGACCAAAGACCACCTGTTTGGGGAAAATTTACTAGAAGGTGA
GTTTGCACAGACTGCGCCCGGGCAGACTTTTGCCAACATCCAAGCGATGACAGATAAAGAGGACGAGCTGGAAAGCAAAG
GGCCCTTTGTGTTTACTGACTTCAGCTATGACGTCAATTTAAAAATGAACGTGGCTTGGCTTGCTGCACCGGTTATTCAA
CAAGGTTATCTGCACAGTTACATTCTCTTTAAGCTACCAACCACAGGGATGGACCAGCTCATCGATGAAAAAGTAGAAGA
GCTGAGCTACATCAACACTGTTTTAATCGGTCAAGACAATGTCCTTCGCGCCCACAACTTAGCCGAGATGCCTGAACTCC
CCTCAATGGATTACATGGCGGCACTAGTTAACAAGTCCGCGCAAGTGGAGCGTCTTAACAGTCTATCTGGACTTCCCGTA
TTAAGTGCCTACACCCCAGTGGATATTCTTGGCAACCCTTGGATACTGATGGTAGAACTGCCCGAGAAAGAGGCGTTTGC
ACATATAGAACAGCTGGAAAAAGTCTTCCTCGTCGCGATGACAGCCGCCATCGTACTGGTTATCTTGGTCTCTCACTGGT
TATCTAACTCCATTACCGCGCCCCTGCTGCGCCTTACTTGGGCTGCAGAGCGTGTTTCGGCTGGCGATCTCGATCAGGAC
ATTGATGGCACAGACCGACCCGATGAAATTGGCCGACTTGCGATAAGCTTCGCGCGAATGCAACGCTCTGTACGCGAAAA
ATTACTCCTCATCCGCGAGCAAAATAGCGAACTTGAGAACAACATTCAGCTTATCCAACAGAAAAACCAAGAGCTCGAAA
CCGCCGACAAACTCAAAGATGACTTCCTTGCGACGACTTCCCATGAACTCCGTACCCCGCTGCATGGCATGATTGGTATC
GCCGAGTCGTTGCAAGCCGGAATTAATGGTCCAGTGCCGACCCAGCAATTGCAGCAGCTACAGATGATCATTAATAGTGG
GCAGCGCTTGAGTAACTTAGTGGACGATCTGCTTGATTACCACAAGATGCGCTATGGCAACCTCGAGATGAACCAGCATG
CCGTTGATGTCAGCACCGCGGTGCGCTTAGTGCTTGAGCTCTCTCAACACCTCTTGGGGGATAAACCGGTACGCATCATC
AATCAAATCCCTAATGACCTGCCCTTGATCAGTGCTGATGAGCAGCGTTTAGAGCAGGTGCTATACAACTTGGTTGGTAA
CGCCATCAAATACACCACGGAAGGTAAGATAGTATTGTCTGCGGATGTCCTTGATAACCAAGTGCGCGTGCAGGTTGTCG
ACACAGGGCAAGGGATTCCAGCAGAAGAGTTGGAGCACATCTTTGAGCCGCTCATTCAAGCCTCAACCTACAGTAGCCGT
TACCGTCAGGGCACTGGCCTTGGCCTCACGATCAGCCGTCAGTTGATTGAGCTGATGGGCGGACACTTGTATGTCAGCAG
CCAACCTATGGTCGGCGCGACATTTAGCTTCACCTTAAATCGCGCGACCGATGAGCAAAAAGCGAATTCACCAGCCCTCG
CTCACCATTTCAATGCACCTCAGCTAGAGAATTCAGCCGTCGAGGAATGCCAGCAAGAGCATGAAAACAGCGATGGGGAT
CTGATTCTCGTTGTCGATGATGAGCCGGTAAATTTGCAGATCGTCACCAACTACCTGCGGATGTCAGGTTATCGCGTGAT
GACCGCAGAAGGCGGTGTCCAAGCCTTAGCGTTGATTGAAAAAGAGAAGCCGAAGGCGCTGTTACTTGATGTCATGATGC
CGGAACTAAATGGCTATGAAGTGTGTGCCCGCTTACGTGCTAACAGCGAAACGGAAGCACTACCTATCATCATGCTTTCC
GCACTTAGCCAGCCACAAGACCGCATTAAGGGCTTTGAGGTCGGTGCGAGTGATTACTTACATAAGCCCTTTAACAAAGA
GGAGCTACTTGCTCGAATCCACGCGCATTTGCGTGCTGCACGCATGCTAGAAGAGCAAGAGGCGAATCAACGCCTCCTCA
GTGAGATTGAGCACCGAAAACAAGTGGAGCAAGGGTTACTGGATACCCAAAGCAAACTGCTTAACCTGCTAGAATCGACG
GCAGAGGCGATTGTTTGTATTCAAGAAGATGGCCGCATCCGCTATGCCAACCTTGCAGCCGCGCAGCTTCTCAATACCCC
CGCAGAGATCTTAGAGCGTCTTAATATCCAAGATTACATCACAGATAGCTCGCAGCTTGAGCAATGGGGAGAAGTTGAAA
CCTTGCACTTCCAGCTCCAGGGCACGCTGCATTCTTGGCCTGCGAACTTGCTGCCGATGCCTGAAGCTTCAGGGCTACAC
ATGATGATTGTGTTGTCTCAGATGGGACCATCAAACCAATATCGGGTCGAAATGCTCGAAAATGCACTTCAGGTCTTGTC
TGAATTCGCTTTTGATGGCGATAAATCGAACCTTCAACAGCTTCGTGAGCTGGGTGGCGAGTTTACTCGTCTCGCTGACA
AGTTGAGCCAAGACGAGAAGAGTAAAGCAGACCTCATTCGGGAGCTCTCCGTCAAAGCGATGAACGAGTGCTTGGTGCTG
TGGGAAGGGAATACAGGTAAAACAAAGTTTGCCCTCGCAGAAGAGAGTGGTCTATGGCGCGTCTATCTCGACCGAAGCAC
GCTACAGACACGGACGCTAGACAAGTATCTGCATATCGATACCCTGCCCAAATCACCCCGTTGGCGTACCGTGCTCAACA
CCCTTAACTACGTCTTAGATCGCGTAGAGCAGCCGTCACCAGAACGCGCTCAACTCGAGTCTTACCGAGACAAACTGCAT
CACTATATGCAGCACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (722-833)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-680)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• HAMP domain (HAMP) (373-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	53.571	99.556	0.533