Detailed information NTG0080852

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: OO986_RS05100
• Genome accession: NZ_AP026552
• Coordinates: 1094970..1097219 (+)
• Length: 749 a.a.
• NCBI ID: WP_108694166.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1089970..1102219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO986_RS05075 (VV208B2_09360)	-	1090284..1090853 (-)	570	WP_011079965.1	hypothetical protein	-
OO986_RS05080 (VV208B2_09370)	lolC	1091119..1092324 (+)	1206	WP_011150839.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
OO986_RS05085 (VV208B2_09380)	lolD	1092317..1093000 (+)	684	WP_011079967.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
OO986_RS05090 (VV208B2_09390)	lolE	1093012..1094256 (+)	1245	WP_108694165.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
OO986_RS05095 (VV208B2_09400)	-	1094452..1094961 (-)	510	WP_011079969.1	DUF2062 domain-containing protein	-
OO986_RS05100 (VV208B2_09410)	comEC	1094970..1097219 (+)	2250	WP_108694166.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
OO986_RS05105 (VV208B2_09420)	msbA	1097252..1099003 (+)	1752	WP_043877274.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
OO986_RS05110 (VV208B2_09430)	lpxK	1099003..1100010 (+)	1008	WP_011150832.1	tetraacyldisaccharide 4'-kinase	-
OO986_RS05115 (VV208B2_09440)	-	1099991..1100170 (+)	180	WP_011079973.1	Trm112 family protein	-
OO986_RS05120 (VV208B2_09450)	kdsB	1100170..1100925 (+)	756	WP_011150831.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OO986_RS05125 (VV208B2_09460)	-	1101097..1101885 (+)	789	WP_011079975.1	diguanylate cyclase	-

Sequence

Protein

• Length: 749 a.a.
• Molecular weight: 84038.13 Da
• Isoelectric Point: 8.3695

>NTDB_id=80852 OO986_RS05100 WP_108694166.1 1094970..1097219(+) (comEC) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MTLLGNNWLLASFSATLISASYWPLMPSWPWLMLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGE
NITINGAVDSPFKQISHGYEGVVSITAINNSHLVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAV
SQGIVGRATIDDSRSWRLVSVKGGRQALIEKAQQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHI
GMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCL
AMSPFSALSTSLWLSFLAVSCVFLVVDLRESSSSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFS
LVVVPVIFVALVLTALDMMPVASMLWQLADLSLWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHFIRWQLSVVLI
ILLSISSLSVHSLSRTRIDVLDVGHGLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDH
AGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHDFEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDAL
AEWILIRDPEQLNSDVVLVPHHGSQTSSIEPFVNAVQAGVAIASLAKGNQWGMPQPQVVETYRRHLTQWFDTGELGQITL
YVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide

• Length: 2250 bp

>NTDB_id=80852 OO986_RS05100 WP_108694166.1 1094970..1097219(+) (comEC) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGACTCTCTTAGGTAACAATTGGTTATTGGCTTCTTTTTCAGCAACCCTTATTTCGGCAAGCTACTGGCCGCTTATGCC
TTCCTGGCCTTGGTTAATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGCAAAACGTGTCGTTACTTGCTGGGGG
TGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAG
AATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGC
AATAAATAATAGTCATTTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATC
AAATCGTAGCGCATGTTACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTC
AGCCAAGGCATCGTTGGACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGC
GCTGATCGAAAAAGCTCAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCG
ACGACATTACCGACGAGCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATT
GGTATGGCTTTTGGTATCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGC
TATTGGACTGAGTCTCAGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCA
CGTTAGTCGCCTTGTTCTCGTTTACGTCAGGGCAAGTCGGTCGTTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGTCTT
GCGATGTCGCCATTTTCTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGA
TCTCCGTGAGTCGTCTTCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCG
CACCTGTGACTGCTTACTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCCTGGTTTAGT
TTGGTGGTGGTGCCTGTTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTATGGCA
GTTAGCGGATTTAAGTTTATGGCCATTAACTTACGCTATGCCTTACGCCCACTTAGGTTGGTGGGGGCTGTCTTCTTTTC
AGGTGGTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGCTGAGACATTTTATTCGCTGGCAACTTTCTGTCGTTCTGATC
ATTTTGCTCAGCATTTCTTCACTATCGGTTCACTCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCT
CGCCGTATTGATTGAGAAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGAAGTATTGCGCAGC
AAGTGATTGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCAT
GCAGGCGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTG
TGTTAAAGGTCATGACTTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACA
ATCCCCACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTG
GCTGAGTGGATTCTGATTCGTGATCCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTC
GTCGATTGAGCCTTTTGTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGC
CACAACCGCAAGTGGTCGAGACTTATCGACGACATCTCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTG
TATGTGGAACAGAGAAACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCA
AGTAGAATAG

Domains

Predicted by InterProScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (503-682)

• Competence protein (Competence) (208-468)

• Domain of unknown function (DUF4131) (DUF4131) (27-173)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio campbellii strain DS40M4	45.491	100	0.458
comEC	Vibrio parahaemolyticus RIMD 2210633	45.418	100	0.457
comEC	Vibrio cholerae strain A1552	43.709	100	0.441