Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RMQ62_RS05580 Genome accession   NZ_CP135065
Coordinates   1147236..1148018 (-) Length   260 a.a.
NCBI ID   WP_313741733.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142236..1153018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS05565 (RMQ62_05565) purC 1145166..1145873 (-) 708 WP_253216911.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RMQ62_RS05570 (RMQ62_05570) - 1145991..1146239 (-) 249 WP_014637254.1 phosphopantetheine-binding protein -
  RMQ62_RS05575 (RMQ62_05575) plsX 1146232..1147239 (-) 1008 WP_313680555.1 phosphate acyltransferase PlsX -
  RMQ62_RS05580 (RMQ62_05580) recO 1147236..1148018 (-) 783 WP_313741733.1 DNA repair protein RecO Machinery gene
  RMQ62_RS05585 (RMQ62_05585) - 1148005..1149183 (-) 1179 WP_024407782.1 pyridoxal phosphate-dependent aminotransferase -
  RMQ62_RS05590 (RMQ62_05590) - 1149270..1150238 (-) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  RMQ62_RS05595 (RMQ62_05595) pcsB 1150341..1151597 (-) 1257 WP_222759550.1 peptidoglycan hydrolase PcsB -
  RMQ62_RS05600 (RMQ62_05600) mreD 1151682..1152197 (-) 516 WP_024385106.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30499.04 Da        Isoelectric Point: 5.4193

>NTDB_id=808515 RMQ62_RS05580 WP_313741733.1 1147236..1148018(-) (recO) [Streptococcus suis strain ID24665]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFVFLVKTLDLMESGLDYEVLTNIFEIQLMGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=808515 RMQ62_RS05580 WP_313741733.1 1147236..1148018(-) (recO) [Streptococcus suis strain ID24665]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACACGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACTT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGTTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCATGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGTCTA
CCTTTTGATTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665