Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P4S50_RS18970 Genome accession   NZ_CP120733
Coordinates   3975572..3976939 (+) Length   455 a.a.
NCBI ID   WP_277732325.1    Uniprot ID   -
Organism   Tepidibacter hydrothermalis strain SWIR-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3970572..3981939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4S50_RS18960 (P4S50_18960) - 3970605..3972590 (+) 1986 WP_277732324.1 elongation factor G -
  P4S50_RS18965 (P4S50_18965) - 3972698..3975136 (+) 2439 WP_277734781.1 ATP-dependent Clp protease ATP-binding subunit -
  P4S50_RS18970 (P4S50_18970) radA 3975572..3976939 (+) 1368 WP_277732325.1 DNA repair protein RadA Machinery gene
  P4S50_RS18975 (P4S50_18975) disA 3976946..3978025 (+) 1080 WP_277732326.1 DNA integrity scanning diadenylate cyclase DisA -
  P4S50_RS18980 (P4S50_18980) - 3978086..3978481 (-) 396 WP_277732327.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  P4S50_RS18985 (P4S50_18985) - 3978690..3979172 (+) 483 WP_277732328.1 CarD family transcriptional regulator -
  P4S50_RS18990 (P4S50_18990) - 3979214..3980317 (+) 1104 WP_277732329.1 PIN/TRAM domain-containing protein -
  P4S50_RS18995 (P4S50_18995) - 3980433..3980885 (+) 453 WP_277732330.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50239.27 Da        Isoelectric Point: 7.1355

>NTDB_id=808482 P4S50_RS18970 WP_277732325.1 3975572..3976939(+) (radA) [Tepidibacter hydrothermalis strain SWIR-1]
MAKIKSKYVCQSCGYESLKWIGKCPECDDWNTFVEEIEDKKSKHDLFIIEKEVQKPVPINKLEINEQERFSTCINELDRV
LGGGVVKGSLILAGGDPGIGKSTLLIQVADNVAKSGKKVLYASGEESIYQIKMRAKRLDIESENLYIFAENNLDIIEKQI
DNIKPDMIIVDSIQTVYSPQITSTPGSVSQIKEGTSRFMKISKKVGISTFIVGHVTKEGSLAGPKILEHMVDAVLYFEGE
RYNTYRMIRSVKNRFGSTNELGVFEMRDKGLIEVENPSKILISEKPKGVSGSVIVATIEGTRPMLVELQALVCPTSFGIP
KRAATGVDYNRVSLLMAVLEKRAGMQIQNQDIYINVVGGIKLNEPAIDLGIVISIASSFRNIETNEKTVAIGEVGLTGEI
RGVSFIEKRIAECKKLGFNRVIVPKSNVKGLENMDDIKIIGVENIREALDFVLGG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=808482 P4S50_RS18970 WP_277732325.1 3975572..3976939(+) (radA) [Tepidibacter hydrothermalis strain SWIR-1]
ATGGCTAAAATTAAGAGCAAGTATGTTTGTCAATCATGCGGATATGAAAGTTTAAAGTGGATTGGTAAATGTCCAGAATG
TGATGATTGGAATACATTTGTAGAAGAAATAGAAGATAAAAAAAGTAAACATGATCTTTTTATAATAGAAAAAGAAGTTC
AAAAACCTGTACCTATAAATAAACTAGAAATAAATGAACAAGAAAGATTTTCAACGTGTATAAATGAGTTAGATAGGGTA
TTAGGAGGAGGAGTAGTTAAAGGATCTTTAATATTAGCAGGTGGAGATCCTGGAATAGGAAAGTCTACTCTTTTGATTCA
AGTTGCAGACAATGTAGCGAAAAGTGGCAAAAAAGTTTTATATGCATCTGGAGAAGAATCTATATATCAGATAAAAATGA
GAGCAAAAAGGCTTGATATAGAAAGTGAGAACTTATATATATTCGCAGAAAATAATCTTGATATAATAGAAAAACAAATA
GATAATATAAAACCAGATATGATAATTGTTGACTCTATACAAACAGTATATAGTCCCCAAATAACTTCTACTCCTGGAAG
TGTCAGTCAAATAAAAGAAGGAACTTCTAGATTTATGAAAATATCTAAAAAAGTAGGTATATCAACTTTTATAGTTGGGC
ATGTAACAAAAGAAGGGTCACTTGCTGGACCTAAAATACTTGAGCATATGGTTGATGCTGTACTTTACTTTGAAGGAGAA
CGATATAATACATATAGAATGATTAGATCTGTTAAAAATAGATTTGGTTCTACTAATGAACTAGGAGTATTTGAGATGAG
AGATAAGGGACTTATAGAAGTTGAAAATCCATCAAAAATACTTATTTCTGAAAAACCAAAGGGAGTATCAGGATCTGTAA
TAGTTGCAACTATAGAAGGTACAAGACCTATGCTGGTAGAACTCCAAGCTCTTGTTTGTCCTACTAGTTTCGGTATACCC
AAAAGGGCTGCAACTGGAGTTGATTACAATAGGGTTTCTCTTCTTATGGCAGTTCTTGAAAAAAGAGCAGGTATGCAAAT
ACAAAATCAAGATATTTATATAAATGTTGTTGGAGGAATAAAACTTAATGAACCAGCTATTGACCTTGGAATAGTAATAT
CTATAGCTTCTAGTTTTAGAAATATAGAAACAAATGAAAAAACTGTTGCCATTGGAGAAGTAGGTTTAACAGGGGAAATA
AGAGGTGTAAGTTTTATAGAAAAAAGAATAGCAGAATGTAAAAAATTAGGTTTTAATAGAGTTATAGTTCCTAAAAGTAA
TGTAAAGGGATTAGAAAATATGGACGATATTAAGATTATAGGTGTAGAAAATATAAGAGAGGCTTTAGACTTTGTACTAG
GAGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

59.17

100

0.596
  radA Streptococcus mitis NCTC 12261

53.846

100

0.538
  radA Streptococcus pneumoniae Rx1

53.846

100

0.538
  radA Streptococcus pneumoniae D39

53.846

100

0.538
  radA Streptococcus pneumoniae R6

53.846

100

0.538
  radA Streptococcus pneumoniae TIGR4

53.846

100

0.538
  radA Streptococcus mitis SK321

53.846

100

0.538