Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RMQ62_RS03300 Genome accession   NZ_CP135065
Coordinates   690007..690651 (-) Length   214 a.a.
NCBI ID   WP_024385031.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 685007..695651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS03290 (RMQ62_03290) - 687817..688362 (-) 546 WP_029171947.1 isoprenylcysteine carboxyl methyltransferase family protein -
  RMQ62_RS03295 (RMQ62_03295) - 688646..690004 (-) 1359 WP_313741845.1 HAMP domain-containing sensor histidine kinase -
  RMQ62_RS03300 (RMQ62_03300) scnR 690007..690651 (-) 645 WP_024385031.1 response regulator transcription factor Regulator
  RMQ62_RS03305 (RMQ62_03305) - 690817..691524 (+) 708 WP_313741846.1 CPBP family intramembrane glutamic endopeptidase -
  RMQ62_RS03310 (RMQ62_03310) - 692306..693715 (-) 1410 WP_313741847.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24564.67 Da        Isoelectric Point: 4.8919

>NTDB_id=808482 RMQ62_RS03300 WP_024385031.1 690007..690651(-) (scnR) [Streptococcus suis strain ID24665]
MAKIMVVEDDIVISQVVCEFLKDHGYEVTHISDGKIALETFREESFDLIVLDIMIPSMTGLEVLQEIRKTSKIPILMLTA
MDDEYTQLVSFNQLISDYVVKPFSPIILVKRIENILRGEGDIIEAADIQIHPSSGAVYMAEEEVQLTKKEYEILLYLAKR
RGKIVNRDHLMLGIWGYTELDSRVLDNHIKNLRKKLPSLPLRTVIGRGYQVEEF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=808482 RMQ62_RS03300 WP_024385031.1 690007..690651(-) (scnR) [Streptococcus suis strain ID24665]
ATGGCGAAAATTATGGTTGTAGAAGATGATATTGTTATCAGTCAAGTAGTTTGTGAGTTTCTAAAGGATCACGGCTATGA
AGTGACCCATATTTCCGACGGAAAAATTGCACTTGAAACATTTCGAGAAGAATCATTTGATTTGATTGTATTGGACATTA
TGATTCCGTCCATGACAGGATTGGAAGTCCTACAGGAGATTCGTAAGACATCAAAAATTCCAATTCTTATGTTAACGGCA
ATGGATGACGAATACACTCAATTGGTTAGCTTCAATCAACTGATTAGTGACTACGTTGTAAAACCTTTTTCGCCGATTAT
TCTTGTGAAACGCATTGAAAATATTTTGCGTGGTGAAGGTGATATTATAGAAGCAGCCGACATCCAAATCCATCCGTCCA
GTGGAGCGGTTTATATGGCAGAAGAAGAAGTGCAATTAACGAAAAAAGAATACGAGATTTTACTGTACTTGGCAAAACGA
CGTGGAAAAATTGTCAATCGTGATCATCTAATGCTGGGAATTTGGGGCTATACAGAACTGGATAGCCGAGTTTTGGACAA
TCATATCAAGAATCTACGTAAGAAGTTACCATCTCTTCCTTTACGAACGGTAATTGGTCGAGGTTATCAGGTTGAGGAAT
TCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.739

100

0.402
  micA Streptococcus pneumoniae Cp1015

37.281

100

0.397
  vicR Streptococcus mutans UA159

35.47

100

0.388