Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RMQ62_RS03240 Genome accession   NZ_CP135065
Coordinates   676139..677800 (-) Length   553 a.a.
NCBI ID   WP_002942943.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 671139..682800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS03215 (RMQ62_03215) - 672412..672879 (-) 468 WP_313680666.1 GNAT family N-acetyltransferase -
  RMQ62_RS03220 (RMQ62_03220) - 673453..673728 (-) 276 WP_024385016.1 HU family DNA-binding protein -
  RMQ62_RS03225 (RMQ62_03225) - 673818..674414 (-) 597 WP_024406376.1 YpmS family protein -
  RMQ62_RS03230 (RMQ62_03230) - 674386..675219 (-) 834 WP_313680665.1 SGNH/GDSL hydrolase family protein -
  RMQ62_RS03235 (RMQ62_03235) - 675212..676045 (-) 834 WP_208498179.1 DegV family protein -
  RMQ62_RS03240 (RMQ62_03240) recN 676139..677800 (-) 1662 WP_002942943.1 DNA repair protein RecN Machinery gene
  RMQ62_RS03245 (RMQ62_03245) - 677803..678228 (-) 426 WP_002936261.1 arginine repressor -
  RMQ62_RS03250 (RMQ62_03250) - 678221..679042 (-) 822 WP_125176126.1 TlyA family RNA methyltransferase -
  RMQ62_RS03255 (RMQ62_03255) - 679035..679904 (-) 870 WP_313680664.1 farnesyl diphosphate synthase -
  RMQ62_RS03260 (RMQ62_03260) - 679904..680119 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  RMQ62_RS03265 (RMQ62_03265) xseA 680094..681437 (-) 1344 WP_249547326.1 exodeoxyribonuclease VII large subunit -
  RMQ62_RS03270 (RMQ62_03270) - 681662..682570 (+) 909 WP_313680663.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62729.91 Da        Isoelectric Point: 4.6542

>NTDB_id=808481 RMQ62_RS03240 WP_002942943.1 676139..677800(-) (recN) [Streptococcus suis strain ID24665]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=808481 RMQ62_RS03240 WP_002942943.1 676139..677800(-) (recN) [Streptococcus suis strain ID24665]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCCACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTTAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACACGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGGCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATTGAAGCAGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGTGATGTGGTGGACAATCTAGACT
TTGATGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGGAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTAGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACCAAA
GGAAAATTTAATCGAGAAGGAAATGAAACGGTAGAATTTTACATCTCCACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTATCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTACAAAATCGGA
CAATATGGACAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45