Detailed information NTG0808452

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: P4G95_RS03455
• Genome accession: NZ_CP120730
• Coordinates: 741943..743076 (+)
• Length: 377 a.a.
• NCBI ID: WP_011886072.1
• Uniprot ID: I2DQK4
• Organism: Burkholderia vietnamiensis strain LMG16232
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 736943..748076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4G95_RS03425 (P4G95_03425)	-	737598..738203 (+)	606	WP_011886067.1	50S ribosomal protein L25/general stress protein Ctc	-
P4G95_RS03430 (P4G95_03430)	pth	738321..738920 (+)	600	WP_034192563.1	aminoacyl-tRNA hydrolase	-
P4G95_RS03435 (P4G95_03435)	hisC	739054..740121 (+)	1068	WP_011886069.1	histidinol-phosphate transaminase	-
P4G95_RS03440 (P4G95_03440)	-	740192..740458 (-)	267	WP_011886070.1	YfhL family 4Fe-4S dicluster ferredoxin	-
P4G95_RS03445 (P4G95_03445)	coaD	740518..741015 (-)	498	WP_006398238.1	pantetheine-phosphate adenylyltransferase	-
P4G95_RS03450 (P4G95_03450)	rsmD	741127..741741 (-)	615	WP_011886071.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
P4G95_RS03455 (P4G95_03455)	pilA	741943..743076 (+)	1134	WP_011886072.1	signal recognition particle-docking protein FtsY	Machinery gene
P4G95_RS03460 (P4G95_03460)	maiA	743161..743805 (-)	645	WP_011886073.1	maleylacetoacetate isomerase	-
P4G95_RS03465 (P4G95_03465)	ybiB	744000..744977 (+)	978	WP_011886074.1	DNA-binding protein YbiB	-
P4G95_RS03470 (P4G95_03470)	leuA	745426..747072 (+)	1647	WP_059668254.1	2-isopropylmalate synthase	-
P4G95_RS03475 (P4G95_03475)	-	747213..747596 (-)	384	WP_011886076.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 40148.96 Da
• Isoelectric Point: 5.0388

>NTDB_id=808452 P4G95_RS03455 WP_011886072.1 741943..743076(+) (pilA) [Burkholderia vietnamiensis strain LMG16232]
MFSFFKRFKKTQEPDSAESQPADAPQPDEPSAAPAPAARAADTARAPAVVMTVTPTNDGSDEVVEAVEIVPPPTQDASAK
KSWLSRLKSGLAKTGSSITSVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRVGRLTDPQQVKAALHDLLV
ELLQPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQES
GDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDA
LGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAVEFADALLG

Nucleotide

• Length: 1134 bp

>NTDB_id=808452 P4G95_RS03455 WP_011886072.1 741943..743076(+) (pilA) [Burkholderia vietnamiensis strain LMG16232]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGACTCCGCGGAATCGCAACCGGCCGACGCGCCGCAGCC
GGACGAGCCGTCCGCTGCGCCGGCCCCCGCCGCGCGAGCGGCGGACACTGCGCGCGCGCCCGCCGTCGTGATGACGGTCA
CGCCCACCAACGACGGCAGCGACGAAGTCGTCGAAGCGGTCGAGATCGTGCCGCCGCCGACGCAGGACGCGTCCGCGAAG
AAGTCCTGGCTGTCGCGCCTGAAATCGGGGCTCGCGAAGACGGGTTCGAGCATCACCAGCGTGTTCGTCAACACGAAGAT
CGACGAGGACCTGTACGAGGAGCTCGAAACCGCGCTGCTGATGTCCGATGCGGGCGTCGATGCGACCGAATACCTGCTCG
GCGCGCTGCGCGAGAAGGTGCGCGTGGGCCGGCTGACCGACCCGCAGCAGGTGAAGGCGGCGCTGCACGATCTGCTCGTC
GAGCTGCTGCAGCCGCTCGAGAAATCGTTGATGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCACCGGCGTGAACGG
CGCGGGCAAGACGACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGCTCGCCGCGGGCG
ACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCCGTCTGGGGCGAGCGCAACAACGTGACGGTCGTGCAGCAGGAAAGC
GGCGATCCGGCCGCGGTGATCTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGACGTGATGATGGCCGACACGGC
CGGCCGGTTGCCGACTCAGCTGCACCTGATGGAGGAGCTGAAAAAGGTGAAGCGCGTGATCGCGAAGGCGCACGACGGCG
CGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCACGCAGGTGAAGGCCTTCGACGATGCG
CTCGGCCTCACCGGCCTGATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATCCTCGCCGCGATCGCGCGGCAGCG
TCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGCCGTTCAACGCGGTGGAATTCGCGGACG
CGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (178-377)

• SRP54-type protein, helical bundle domain (SRP54_N) (95-157)

3D structure

• AlphaFold DB: I2DQK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.885	100	0.584