Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RMQ63_RS08175 Genome accession   NZ_CP135063
Coordinates   1688398..1690059 (+) Length   553 a.a.
NCBI ID   WP_002942943.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683398..1695059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS08145 (RMQ63_08145) - 1683628..1684536 (-) 909 WP_313680663.1 neutral zinc metallopeptidase -
  RMQ63_RS08150 (RMQ63_08150) xseA 1684761..1686104 (+) 1344 WP_249547326.1 exodeoxyribonuclease VII large subunit -
  RMQ63_RS08155 (RMQ63_08155) - 1686079..1686294 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  RMQ63_RS08160 (RMQ63_08160) - 1686294..1687163 (+) 870 WP_313680664.1 farnesyl diphosphate synthase -
  RMQ63_RS08165 (RMQ63_08165) - 1687156..1687977 (+) 822 WP_125176126.1 TlyA family RNA methyltransferase -
  RMQ63_RS08170 (RMQ63_08170) - 1687970..1688395 (+) 426 WP_002936261.1 arginine repressor -
  RMQ63_RS08175 (RMQ63_08175) recN 1688398..1690059 (+) 1662 WP_002942943.1 DNA repair protein RecN Machinery gene
  RMQ63_RS08180 (RMQ63_08180) - 1690153..1690986 (+) 834 WP_208498179.1 DegV family protein -
  RMQ63_RS08185 (RMQ63_08185) - 1690979..1691812 (+) 834 WP_313680665.1 SGNH/GDSL hydrolase family protein -
  RMQ63_RS08190 (RMQ63_08190) - 1691784..1692380 (+) 597 WP_024406376.1 YpmS family protein -
  RMQ63_RS08195 (RMQ63_08195) - 1692470..1692745 (+) 276 WP_024385016.1 HU family DNA-binding protein -
  RMQ63_RS08200 (RMQ63_08200) - 1693319..1693786 (+) 468 WP_313680666.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62729.91 Da        Isoelectric Point: 4.6542

>NTDB_id=808451 RMQ63_RS08175 WP_002942943.1 1688398..1690059(+) (recN) [Streptococcus suis strain ID32563]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=808451 RMQ63_RS08175 WP_002942943.1 1688398..1690059(+) (recN) [Streptococcus suis strain ID32563]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCCACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTTAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACACGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGGCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATTGAAGCAGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGTGATGTGGTGGACAATCTAGACT
TTGATGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGGAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTAGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACCAAA
GGAAAATTTAATCGAGAAGGAAATGAAACGGTAGAATTTTACATCTCCACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTATCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTACAAAATCGGA
CAATATGGACAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45