Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P4G95_RS03355 Genome accession   NZ_CP120730
Coordinates   725291..726796 (+) Length   501 a.a.
NCBI ID   WP_011886056.1    Uniprot ID   -
Organism   Burkholderia vietnamiensis strain LMG16232     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 720291..731796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4G95_RS03330 (P4G95_03330) kdsD 721532..722515 (+) 984 WP_014723665.1 arabinose 5-phosphate isomerase KdsD -
  P4G95_RS03335 (P4G95_03335) - 722515..723051 (+) 537 WP_011886052.1 HAD family hydrolase -
  P4G95_RS03340 (P4G95_03340) lptC 723055..723669 (+) 615 WP_011886053.1 LPS export ABC transporter periplasmic protein LptC -
  P4G95_RS03345 (P4G95_03345) lptA 723690..724355 (+) 666 WP_011886054.1 lipopolysaccharide transport periplasmic protein LptA -
  P4G95_RS03350 (P4G95_03350) lptB 724352..725128 (+) 777 WP_011886055.1 LPS export ABC transporter ATP-binding protein -
  P4G95_RS03355 (P4G95_03355) rpoN/rpoN1 725291..726796 (+) 1506 WP_011886056.1 RNA polymerase factor sigma-54 Machinery gene
  P4G95_RS03360 (P4G95_03360) raiA 726955..727314 (+) 360 WP_011886057.1 ribosome-associated translation inhibitor RaiA -
  P4G95_RS03365 (P4G95_03365) - 727318..727512 (-) 195 WP_283848928.1 hypothetical protein -
  P4G95_RS03370 (P4G95_03370) - 727511..728023 (+) 513 WP_011886058.1 PTS sugar transporter subunit IIA -
  P4G95_RS03375 (P4G95_03375) hprK 728153..729121 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  P4G95_RS03380 (P4G95_03380) rapZ 729197..730105 (+) 909 WP_034192566.1 RNase adapter RapZ -
  P4G95_RS03385 (P4G95_03385) - 730133..730771 (+) 639 WP_011886060.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54798.95 Da        Isoelectric Point: 4.8247

>NTDB_id=808451 P4G95_RS03355 WP_011886056.1 725291..726796(+) (rpoN/rpoN1) [Burkholderia vietnamiensis strain LMG16232]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESDDEWIASPLRVAADGSLIAQTPPAPNGESGS
MNGSGQSSERAERDEPAATDEYDGYGSGDASDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLREHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKQLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=808451 P4G95_RS03355 WP_011886056.1 725291..726796(+) (rpoN/rpoN1) [Burkholderia vietnamiensis strain LMG16232]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAACACCTTGCGTTGACGCCGCAGCTGCAGCAGTCGATTCGGCTTTTGCA
GCTGTCGACGCTCGAGCTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTGGAAAGCGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCAGCCGACGGATCGCTGATCGCGCAGACGCCGCCCGCCCCGAACGGCGAGTCCGGCAGC
ATGAACGGCAGCGGCCAGTCGAGCGAGCGCGCCGAACGCGACGAGCCGGCCGCCACCGACGAATACGACGGCTATGGCTC
GGGCGACGCGAGCGATGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGATCTCC
CGCCGCTGCAGGTGCAGGAAGCCGCCACGTCGCTGCGCGAGCATCTGTCCGCGCAGCTGCGCGTCACGCAGGCCAGTCCG
CGCGATCGCGCGCTCGTAATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
GGCCGACCTGCCGCCCGAACTCGAAGTCGACTGCGACGAGCTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGCGTCGGCGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAACTGCTGCGGCTCGATCCGTCCCCGACCCGCACGCTC
GCGCTGGAAATCGTCTCGCAGCATCTCGAGCTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAACTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCGGGCGCGGCCTACGGCAAGGCCGAGG
CCGACTACGTGGTACCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAGCTCAATCCGGAGGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATTCTGCGCAACAGCCGGGGCGATCCGTCGACCGGATCGTTGAAGCAACA
GCTGCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCACAGGCTATTGTCG
AACGTCAGAAGAACTTCTTTGCGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGGGACGCTGGAGTTCAAGTACTT
CTTCGGATCGCACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAGTCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGATTCGTGGTCGCGCGC
CGCACGGTCGCGAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAATCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.836

100

0.695