Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RMQ63_RS08070 Genome accession   NZ_CP135063
Coordinates   1658711..1659445 (+) Length   244 a.a.
NCBI ID   WP_024401973.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653711..1664445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS08045 (RMQ63_08045) - 1654211..1654519 (-) 309 WP_002938710.1 DUF1827 family protein -
  RMQ63_RS08050 (RMQ63_08050) - 1654574..1655035 (-) 462 WP_002938708.1 NUDIX hydrolase -
  RMQ63_RS08055 (RMQ63_08055) clpE 1655221..1657449 (-) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  RMQ63_RS08060 (RMQ63_08060) - 1657673..1657903 (+) 231 WP_002938704.1 DUF1797 family protein -
  RMQ63_RS08065 (RMQ63_08065) - 1658029..1658718 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  RMQ63_RS08070 (RMQ63_08070) amiE 1658711..1659445 (+) 735 WP_024401973.1 amino acid ABC transporter ATP-binding protein Regulator
  RMQ63_RS08075 (RMQ63_08075) - 1659679..1660527 (+) 849 WP_044685945.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RMQ63_RS08080 (RMQ63_08080) - 1660770..1662965 (+) 2196 WP_313680655.1 YSIRK-type signal peptide-containing protein -
  RMQ63_RS08085 (RMQ63_08085) - 1663127..1663525 (+) 399 WP_044674776.1 hypothetical protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26895.13 Da        Isoelectric Point: 4.7252

>NTDB_id=808449 RMQ63_RS08070 WP_024401973.1 1658711..1659445(+) (amiE) [Streptococcus suis strain ID32563]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGIDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=808449 RMQ63_RS08070 WP_024401973.1 1658711..1659445(+) (amiE) [Streptococcus suis strain ID32563]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTTTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTAGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTATTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCAAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CCAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACTAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365