Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RMQ63_RS05845 Genome accession   NZ_CP135063
Coordinates   1220054..1220836 (+) Length   260 a.a.
NCBI ID   WP_024407783.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1215054..1225836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS05825 (RMQ63_05825) mreD 1215875..1216390 (+) 516 WP_024385106.1 rod shape-determining protein MreD -
  RMQ63_RS05830 (RMQ63_05830) pcsB 1216475..1217731 (+) 1257 WP_222759550.1 peptidoglycan hydrolase PcsB -
  RMQ63_RS05835 (RMQ63_05835) - 1217834..1218802 (+) 969 WP_313680554.1 ribose-phosphate diphosphokinase -
  RMQ63_RS05840 (RMQ63_05840) - 1218889..1220067 (+) 1179 WP_029172090.1 pyridoxal phosphate-dependent aminotransferase -
  RMQ63_RS05845 (RMQ63_05845) recO 1220054..1220836 (+) 783 WP_024407783.1 DNA repair protein RecO Machinery gene
  RMQ63_RS05850 (RMQ63_05850) plsX 1220833..1221840 (+) 1008 WP_313680555.1 phosphate acyltransferase PlsX -
  RMQ63_RS05855 (RMQ63_05855) - 1221833..1222081 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  RMQ63_RS05860 (RMQ63_05860) purC 1222199..1222906 (+) 708 WP_253216911.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30495.03 Da        Isoelectric Point: 5.4193

>NTDB_id=808417 RMQ63_RS05845 WP_024407783.1 1220054..1220836(+) (recO) [Streptococcus suis strain ID32563]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRVYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=808417 RMQ63_RS05845 WP_024407783.1 1220054..1220836(+) (recO) [Streptococcus suis strain ID32563]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTTTACAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCATTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCCCTCTTTGCATTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGACGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTCGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGTTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669