Detailed information NTG0808397

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: P3T49_RS19105
• Genome accession: NZ_CP120723
• Coordinates: 3773485..3774627 (+)
• Length: 380 a.a.
• NCBI ID: WP_199679886.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain NX-12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3768485..3779627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3T49_RS21145	-	3768954..3769654 (+)	701	Protein_3728	bacteriocin biosynthesis protein AlbG	-
P3T49_RS19090	-	3769661..3771034 (-)	1374	WP_277714044.1	YncE family protein	-
P3T49_RS19095	-	3771075..3772436 (-)	1362	WP_277714045.1	YncE family protein	-
P3T49_RS19100	-	3772718..3773272 (+)	555	WP_151290076.1	YdhK family protein	-
P3T49_RS19105	rapF	3773485..3774627 (+)	1143	WP_199679886.1	tetratricopeptide repeat protein	Regulator
P3T49_RS19110	-	3774611..3774730 (+)	120	WP_003326489.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
P3T49_RS19115	-	3774829..3775284 (+)	456	WP_277714047.1	YbaK/EbsC family protein	-
P3T49_RS19120	speB	3775326..3776198 (-)	873	WP_212063951.1	agmatinase	-
P3T49_RS19125	speE	3776259..3777089 (-)	831	WP_003326486.1	spermidine synthase	-
P3T49_RS19130	-	3777294..3779369 (+)	2076	WP_106272399.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45523.29 Da
• Isoelectric Point: 5.1491

>NTDB_id=808397 P3T49_RS19105 WP_199679886.1 3773485..3774627(+) (rapF) [Bacillus atrophaeus strain NX-12]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQIEEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDHREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1143 bp

>NTDB_id=808397 P3T49_RS19105 WP_199679886.1 3773485..3774627(+) (rapF) [Bacillus atrophaeus strain NX-12]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATAGAAGAAGACCAGGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCAGATTTGCTGCTTGAAATTGATAAAAAACAGGCCCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCACCGCGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAACCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACACTGTGTATTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.528	100	0.797
rapC	Bacillus subtilis subsp. subtilis str. 168	56.579	100	0.566