Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P3T49_RS14105 Genome accession   NZ_CP120723
Coordinates   2786859..2787605 (-) Length   248 a.a.
NCBI ID   WP_151290373.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2781859..2792605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS14080 mreC 2782255..2783127 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  P3T49_RS14085 mreB 2783158..2784171 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  P3T49_RS14090 radC 2784263..2784958 (-) 696 WP_003325238.1 RadC family protein -
  P3T49_RS14095 - 2784993..2785562 (-) 570 WP_010789377.1 Maf family protein -
  P3T49_RS14100 - 2785709..2786725 (-) 1017 WP_151290374.1 SPOR domain-containing protein -
  P3T49_RS14105 comC 2786859..2787605 (-) 747 WP_151290373.1 prepilin peptidase Machinery gene
  P3T49_RS14110 - 2787759..2789054 (-) 1296 WP_277713678.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  P3T49_RS14115 valS 2789112..2791754 (-) 2643 WP_277713679.1 valine--tRNA ligase -
  P3T49_RS14120 - 2792201..2792392 (+) 192 WP_010789382.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26837.56 Da        Isoelectric Point: 9.1073

>NTDB_id=808381 P3T49_RS14105 WP_151290373.1 2786859..2787605(-) (comC) [Bacillus atrophaeus strain NX-12]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSFCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=808381 P3T49_RS14105 WP_151290373.1 2786859..2787605(-) (comC) [Bacillus atrophaeus strain NX-12]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCTATTATAAAACCGCGCTCCTTCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCCTTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCCGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCTTGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.943

99.597

0.617