Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P3T49_RS13135 Genome accession   NZ_CP120723
Coordinates   2614185..2614952 (-) Length   255 a.a.
NCBI ID   WP_088117596.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2609185..2619952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS13115 - 2609343..2610155 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  P3T49_RS13120 ccpN 2610181..2610819 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  P3T49_RS13125 glyS 2610967..2613006 (-) 2040 WP_277713624.1 glycine--tRNA ligase subunit beta -
  P3T49_RS13130 glyQ 2612999..2613886 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  P3T49_RS13135 recO 2614185..2614952 (-) 768 WP_088117596.1 DNA repair protein RecO Machinery gene
  P3T49_RS13140 - 2614989..2615132 (-) 144 WP_004429487.1 YqzL family protein -
  P3T49_RS13145 era 2615289..2616194 (-) 906 WP_004429485.1 GTPase Era -
  P3T49_RS13150 - 2616175..2616585 (-) 411 WP_010789236.1 cytidine deaminase -
  P3T49_RS13155 - 2616699..2617076 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  P3T49_RS13160 ybeY 2617057..2617530 (-) 474 WP_277713626.1 rRNA maturation RNase YbeY -
  P3T49_RS13165 - 2617531..2619666 (-) 2136 WP_010789238.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29184.86 Da        Isoelectric Point: 8.5598

>NTDB_id=808373 P3T49_RS13135 WP_088117596.1 2614185..2614952(-) (recO) [Bacillus atrophaeus strain NX-12]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=808373 P3T49_RS13135 WP_088117596.1 2614185..2614952(-) (recO) [Bacillus atrophaeus strain NX-12]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGTTTGTATCCTGAACTCAACCACTGTGTGCATTGCCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.941

100

0.929