Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3T49_RS08060 Genome accession   NZ_CP120723
Coordinates   1559667..1559945 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554667..1564945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS08040 - 1555861..1556775 (+) 915 WP_277714656.1 ketopantoate reductase family protein -
  P3T49_RS08045 - 1556808..1558040 (-) 1233 WP_277714657.1 aminopeptidase -
  P3T49_RS08050 - 1558142..1558276 (-) 135 WP_010788482.1 protein YkpC -
  P3T49_RS08055 mreBH 1558377..1559384 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  P3T49_RS08060 abrB 1559667..1559945 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  P3T49_RS08065 - 1560158..1561444 (+) 1287 WP_003329145.1 ATP-binding protein -
  P3T49_RS08070 - 1561457..1562296 (+) 840 WP_277714658.1 gamma-glutamylcyclotransferase -
  P3T49_RS08075 ktrC 1562346..1563011 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  P3T49_RS08080 ade 1563181..1564908 (+) 1728 WP_277714659.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=808357 P3T49_RS08060 WP_003329146.1 1559667..1559945(+) (abrB) [Bacillus atrophaeus strain NX-12]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=808357 P3T49_RS08060 WP_003329146.1 1559667..1559945(+) (abrB) [Bacillus atrophaeus strain NX-12]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAGGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576