Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   P3T49_RS07940 Genome accession   NZ_CP120723
Coordinates   1535270..1535845 (+) Length   191 a.a.
NCBI ID   WP_003327252.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530270..1540845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS07910 dapD 1530389..1531099 (+) 711 WP_003327258.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  P3T49_RS07915 - 1531172..1532296 (+) 1125 WP_061670698.1 N-acetyldiaminopimelate deacetylase -
  P3T49_RS07920 - 1532357..1532602 (+) 246 WP_003327256.1 YkuS family protein -
  P3T49_RS07925 - 1532641..1533444 (-) 804 WP_003327255.1 mechanosensitive ion channel family protein -
  P3T49_RS07930 ahpA 1533694..1534236 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  P3T49_RS07935 - 1534322..1534780 (+) 459 WP_003327253.1 TlpA family protein disulfide reductase -
  P3T49_RS07940 rok 1535270..1535845 (+) 576 WP_003327252.1 transcriptional regulator Rok Regulator
  P3T49_RS07945 - 1535891..1536850 (-) 960 WP_010788466.1 hypothetical protein -
  P3T49_RS07950 - 1536994..1537578 (+) 585 WP_010788467.1 molybdenum cofactor guanylyltransferase -
  P3T49_RS07955 - 1537650..1538669 (+) 1020 WP_088117081.1 MoeB/ThiF family adenylyltransferase -
  P3T49_RS07960 glp 1538688..1539980 (+) 1293 WP_088117082.1 gephyrin-like molybdotransferase Glp -
  P3T49_RS07965 mobB 1539941..1540465 (+) 525 WP_151290892.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21713.65 Da        Isoelectric Point: 9.8783

>NTDB_id=808356 P3T49_RS07940 WP_003327252.1 1535270..1535845(+) (rok) [Bacillus atrophaeus strain NX-12]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQSISSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQSL
IKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=808356 P3T49_RS07940 WP_003327252.1 1535270..1535845(+) (rok) [Bacillus atrophaeus strain NX-12]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGCAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCTGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTTGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAATCCATCTCTTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAGAAGAGG
AACTGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAGCGATCA
AAAGCTCCGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAAAGTTTA
ATTAAAATGTATCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTCTGCTGA
AAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.598

100

0.88