Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P3T49_RS07835 Genome accession   NZ_CP120723
Coordinates   1517981..1518445 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512981..1523445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS07815 - 1513428..1515248 (+) 1821 WP_277714650.1 PAS domain-containing protein -
  P3T49_RS07820 - 1515271..1516440 (-) 1170 WP_151290899.1 aminotransferase A -
  P3T49_RS07825 - 1516646..1516807 (-) 162 WP_003327276.1 hypothetical protein -
  P3T49_RS07830 cheV 1517016..1517927 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  P3T49_RS07835 kre 1517981..1518445 (-) 465 WP_003327274.1 YkyB family protein Regulator
  P3T49_RS07840 - 1518568..1519863 (-) 1296 WP_277714651.1 MFS transporter -
  P3T49_RS07845 - 1519939..1520436 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  P3T49_RS07850 - 1520572..1521432 (-) 861 WP_277714652.1 metallophosphoesterase -
  P3T49_RS07855 fadH 1521579..1522343 (+) 765 WP_003327269.1 2,4-dienoyl-CoA reductase -
  P3T49_RS21215 - 1522428..1522560 (+) 133 Protein_1504 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=808355 P3T49_RS07835 WP_003327274.1 1517981..1518445(-) (kre) [Bacillus atrophaeus strain NX-12]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=808355 P3T49_RS07835 WP_003327274.1 1517981..1518445(-) (kre) [Bacillus atrophaeus strain NX-12]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942