Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P3T49_RS06760 Genome accession   NZ_CP120723
Coordinates   1320858..1321283 (+) Length   141 a.a.
NCBI ID   WP_277714818.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1315858..1326283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS06720 - 1316068..1316261 (+) 194 Protein_1277 peptidoglycan-binding domain-containing protein -
  P3T49_RS06725 - 1316974..1317299 (-) 326 Protein_1278 contact-dependent growth inhibition system immunity protein -
  P3T49_RS06730 - 1317288..1317608 (+) 321 WP_277714575.1 putative quinol monooxygenase -
  P3T49_RS06735 - 1319051..1319332 (-) 282 WP_061571258.1 hypothetical protein -
  P3T49_RS06745 - 1319726..1319878 (+) 153 Protein_1281 hypothetical protein -
  P3T49_RS06750 - 1319999..1320328 (-) 330 WP_010788288.1 hypothetical protein -
  P3T49_RS06755 - 1320388..1320666 (-) 279 WP_003327515.1 hypothetical protein -
  P3T49_RS06760 nucA/comI 1320858..1321283 (+) 426 WP_277714818.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P3T49_RS06765 - 1321432..1322094 (+) 663 WP_010788290.1 MgtC/SapB family protein -
  P3T49_RS06770 - 1322152..1322391 (-) 240 WP_106359748.1 hypothetical protein -
  P3T49_RS06775 - 1322604..1322816 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  P3T49_RS06780 - 1322876..1323091 (-) 216 WP_081112782.1 spore coat protein -
  P3T49_RS06785 - 1323406..1324806 (+) 1401 WP_088116953.1 polysaccharide deacetylase family protein -
  P3T49_RS06790 - 1324859..1325332 (-) 474 WP_088118466.1 YjfA family protein -
  P3T49_RS06795 - 1325468..1325878 (-) 411 WP_277714576.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15474.32 Da        Isoelectric Point: 4.7462

>NTDB_id=808351 P3T49_RS06760 WP_277714818.1 1320858..1321283(+) (nucA/comI) [Bacillus atrophaeus strain NX-12]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGVPTKPGYDRDEWPMAVCEEGGTGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=808351 P3T49_RS06760 WP_277714818.1 1320858..1321283(+) (nucA/comI) [Bacillus atrophaeus strain NX-12]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTCCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGGTTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGACCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.317

89.362

0.539