Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   P3T49_RS06335 Genome accession   NZ_CP120723
Coordinates   1249087..1250040 (+) Length   317 a.a.
NCBI ID   WP_010788227.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244087..1255040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS06310 argF 1245898..1246868 (+) 971 Protein_1195 ornithine carbamoyltransferase -
  P3T49_RS06315 - 1246950..1247129 (+) 180 WP_003327605.1 YjzC family protein -
  P3T49_RS06320 - 1247157..1247345 (-) 189 WP_003327604.1 YjzD family protein -
  P3T49_RS06325 - 1247605..1248339 (+) 735 WP_063637420.1 hypothetical protein -
  P3T49_RS06330 - 1248422..1248997 (+) 576 WP_003327602.1 hypothetical protein -
  P3T49_RS06335 med 1249087..1250040 (+) 954 WP_010788227.1 BMP family ABC transporter substrate-binding protein Regulator
  P3T49_RS06340 comZ 1250055..1250246 (+) 192 WP_010788228.1 ComZ family protein Regulator
  P3T49_RS06345 - 1250276..1250503 (-) 228 WP_010788229.1 hypothetical protein -
  P3T49_RS06350 fabH 1250675..1251613 (+) 939 WP_003327597.1 beta-ketoacyl-ACP synthase III -
  P3T49_RS06355 fabF 1251635..1252873 (+) 1239 WP_277714549.1 beta-ketoacyl-ACP synthase II -
  P3T49_RS06360 - 1252951..1253736 (+) 786 WP_088116920.1 DUF2268 domain-containing protein -
  P3T49_RS06365 - 1253928..1254914 (+) 987 WP_010788232.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35410.91 Da        Isoelectric Point: 4.4404

>NTDB_id=808345 P3T49_RS06335 WP_010788227.1 1249087..1250040(+) (med) [Bacillus atrophaeus strain NX-12]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLSIQSAYNVDVYYKEGVKTDEDILNAIED
YHKRGINLLFGHGSEYEEMFNLVSEDYPDMEFVISNAESKADNVTSVHLNGEAMGFFGGMTAAHMSKTNQIGVIASFKWQ
PEVDGFIKGAKYENPDITINTKYTDHWDDDTTAVKLYEKIKEEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYGIIAEQYSNGILESGDHYFDFKDHVVEMGTFSPLVDKAFQDKIAALIKTYNRTDELPKKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=808345 P3T49_RS06335 WP_010788227.1 1249087..1250040(+) (med) [Bacillus atrophaeus strain NX-12]
ATGATCACTAGGCTTGTCATGATCTTTTCTGTCCTCCTGTTACTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGTATGCTCTTTCCCGATACCATCAATGATCTAGTGTGGGGAACAAAAGGGTATAAAGGTTTACTAAGTA
TACAATCTGCATATAATGTCGACGTCTATTATAAAGAAGGCGTTAAGACTGATGAGGATATATTAAACGCCATTGAAGAT
TACCACAAGAGAGGGATAAACCTTCTTTTTGGCCATGGCAGTGAATACGAAGAAATGTTTAATCTGGTCAGTGAGGATTA
CCCGGACATGGAATTTGTCATTTCTAACGCGGAATCAAAAGCCGACAACGTCACAAGCGTTCATCTTAACGGAGAAGCGA
TGGGGTTTTTCGGCGGGATGACAGCCGCACATATGTCCAAAACCAATCAAATCGGCGTGATTGCTTCTTTTAAATGGCAG
CCTGAAGTAGACGGCTTCATCAAAGGGGCCAAGTATGAAAATCCGGACATCACTATCAATACGAAATATACAGACCACTG
GGATGACGATACCACAGCCGTGAAGCTTTATGAGAAGATAAAAGAGGAAGGCGCGGATGTTGTATATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAACAAATTAAAAAAGACGGTCTCTATGCGATCGGCTATGTCACAGACCAGTCTGATCTG
GGCGAAAATACCGTTTTGACAAGCACTGTTCAAAATGTGGACAAGGCCTATGGCATCATAGCCGAGCAATACAGCAACGG
CATTTTGGAAAGCGGAGATCACTATTTCGATTTTAAAGATCATGTCGTTGAAATGGGGACATTCAGTCCTCTTGTTGACA
AAGCCTTCCAAGATAAAATTGCCGCTCTTATCAAAACGTATAATCGAACAGATGAACTGCCGAAAAAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

87.382

100

0.874