Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | TSUB_RS02325 | Genome accession | NZ_AP023054 |
| Coordinates | 477353..477820 (-) | Length | 155 a.a. |
| NCBI ID | WP_087016579.1 | Uniprot ID | - |
| Organism | Thaumasiovibrio subtropicus strain C4V358 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 472353..482820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TSUB_RS02305 | coaE | 472828..473433 (-) | 606 | WP_087016587.1 | dephospho-CoA kinase | - |
| TSUB_RS02310 | pilD | 473434..474303 (-) | 870 | WP_087016585.1 | prepilin peptidase | Machinery gene |
| TSUB_RS02315 | pilC | 474382..475629 (-) | 1248 | WP_087016583.1 | type II secretion system F family protein | Machinery gene |
| TSUB_RS02320 | pilB | 475662..477353 (-) | 1692 | WP_087016581.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| TSUB_RS02325 | pilA | 477353..477820 (-) | 468 | WP_087016579.1 | pilin | Machinery gene |
| TSUB_RS02330 | nadC | 478230..479123 (-) | 894 | WP_087016577.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| TSUB_RS02335 | ampD | 479287..479826 (+) | 540 | WP_087016575.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| TSUB_RS02340 | pdhR | 480048..480821 (+) | 774 | WP_087016573.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 16373.72 Da Isoelectric Point: 9.4532
>NTDB_id=80833 TSUB_RS02325 WP_087016579.1 477353..477820(-) (pilA) [Thaumasiovibrio subtropicus strain C4V358]
MNKQFKKNRKQKGFTLIELMIVVAVIGVLAAIAVPQYQNYIKKSELGAGLATIASLKVNLEDKIATVAEFPTIATADVAA
ELGASSTPLGDISTVQDSGSSVAGNILLTFGTNSQHNTRKIALNRDANGQWSCLTNVPSTASSTYPKNCSYNALP
MNKQFKKNRKQKGFTLIELMIVVAVIGVLAAIAVPQYQNYIKKSELGAGLATIASLKVNLEDKIATVAEFPTIATADVAA
ELGASSTPLGDISTVQDSGSSVAGNILLTFGTNSQHNTRKIALNRDANGQWSCLTNVPSTASSTYPKNCSYNALP
Nucleotide
Download Length: 468 bp
>NTDB_id=80833 TSUB_RS02325 WP_087016579.1 477353..477820(-) (pilA) [Thaumasiovibrio subtropicus strain C4V358]
ATGAATAAGCAGTTTAAGAAAAACAGAAAGCAGAAGGGTTTTACCCTGATTGAATTGATGATTGTAGTCGCGGTTATTGG
TGTGCTCGCAGCGATTGCGGTACCTCAGTACCAAAACTACATCAAGAAATCTGAGCTAGGTGCAGGCTTAGCAACAATCG
CCTCTCTGAAAGTCAATCTTGAAGATAAGATAGCTACGGTTGCAGAGTTCCCTACAATTGCAACAGCCGATGTAGCTGCA
GAGCTAGGAGCTTCCAGCACACCGCTTGGTGATATTTCAACAGTACAAGATAGCGGCTCTTCGGTCGCTGGTAATATTCT
TCTTACTTTTGGCACAAACTCTCAGCACAATACACGGAAGATAGCATTAAACCGTGATGCTAATGGTCAATGGTCATGTT
TGACTAATGTCCCATCTACGGCATCATCTACTTACCCTAAAAACTGCAGCTACAATGCCCTGCCATAA
ATGAATAAGCAGTTTAAGAAAAACAGAAAGCAGAAGGGTTTTACCCTGATTGAATTGATGATTGTAGTCGCGGTTATTGG
TGTGCTCGCAGCGATTGCGGTACCTCAGTACCAAAACTACATCAAGAAATCTGAGCTAGGTGCAGGCTTAGCAACAATCG
CCTCTCTGAAAGTCAATCTTGAAGATAAGATAGCTACGGTTGCAGAGTTCCCTACAATTGCAACAGCCGATGTAGCTGCA
GAGCTAGGAGCTTCCAGCACACCGCTTGGTGATATTTCAACAGTACAAGATAGCGGCTCTTCGGTCGCTGGTAATATTCT
TCTTACTTTTGGCACAAACTCTCAGCACAATACACGGAAGATAGCATTAAACCGTGATGCTAATGGTCAATGGTCATGTT
TGACTAATGTCCCATCTACGGCATCATCTACTTACCCTAAAAACTGCAGCTACAATGCCCTGCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
50.323 |
100 |
0.503 |
| pilA | Vibrio cholerae C6706 |
50.323 |
100 |
0.503 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.323 |
100 |
0.503 |
| pilA | Pseudomonas aeruginosa PAK |
39.61 |
99.355 |
0.394 |
| pilA | Acinetobacter baumannii strain A118 |
42.143 |
90.323 |
0.381 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.136 |
94.839 |
0.381 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.429 |
90.323 |
0.374 |