Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3T49_RS00245 Genome accession   NZ_CP120723
Coordinates   44541..44831 (-) Length   96 a.a.
NCBI ID   WP_088116342.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39541..49831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS00205 darA 39559..39888 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  P3T49_RS00210 - 39901..40341 (+) 441 WP_151289935.1 YaaR family protein -
  P3T49_RS00215 holB 40353..41342 (+) 990 WP_277714187.1 DNA polymerase III subunit delta' -
  P3T49_RS00220 ricT 41345..42172 (+) 828 WP_061571110.1 competence/sporulation regulator complex protein RicT -
  P3T49_RS00225 yabA 42187..42546 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  P3T49_RS00230 - 42607..43350 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P3T49_RS00235 - 43337..43636 (+) 300 WP_003328599.1 GIY-YIG nuclease family protein -
  P3T49_RS00240 rsmI 43611..44489 (+) 879 WP_010787389.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P3T49_RS00245 abrB 44541..44831 (-) 291 WP_088116342.1 transition state genes transcriptional regulator AbrB Regulator
  P3T49_RS00250 metG 45318..47312 (+) 1995 WP_277714188.1 methionine--tRNA ligase -
  P3T49_RS00255 - 47391..48158 (+) 768 WP_277714189.1 TatD family hydrolase -
  P3T49_RS00260 - 48316..49641 (+) 1326 WP_277714190.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10858.67 Da        Isoelectric Point: 6.3482

>NTDB_id=808327 P3T49_RS00245 WP_088116342.1 44541..44831(-) (abrB) [Bacillus atrophaeus strain NX-12]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=808327 P3T49_RS00245 WP_088116342.1 44541..44831(-) (abrB) [Bacillus atrophaeus strain NX-12]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

100

0.948