Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P3T49_RS00020 Genome accession   NZ_CP120723
Coordinates   3027..4139 (+) Length   370 a.a.
NCBI ID   WP_010790564.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS00005 dnaA 1..1341 (+) 1341 WP_003326038.1 chromosomal replication initiator protein DnaA -
  P3T49_RS00010 dnaN 1523..2659 (+) 1137 WP_010790563.1 DNA polymerase III subunit beta -
  P3T49_RS00015 rlbA 2796..3011 (+) 216 WP_003326035.1 ribosome maturation protein RlbA -
  P3T49_RS00020 recF 3027..4139 (+) 1113 WP_010790564.1 DNA replication/repair protein RecF Machinery gene
  P3T49_RS00025 remB 4157..4402 (+) 246 WP_094231208.1 extracellular matrix regulator RemB -
  P3T49_RS00030 gyrB 4459..6375 (+) 1917 WP_010790565.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P3T49_RS00035 gyrA 6602..9067 (+) 2466 WP_277714184.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42454.47 Da        Isoelectric Point: 7.6570

>NTDB_id=808325 P3T49_RS00020 WP_010790564.1 3027..4139(+) (recF) [Bacillus atrophaeus strain NX-12]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGS
IPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQR
NHFLKQLQSRKQTDQTMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDLSKI
GDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=808325 P3T49_RS00020 WP_010790564.1 3027..4139(+) (recF) [Bacillus atrophaeus strain NX-12]
TTGTATATCCAAAATTTGGAATTAACGTCTTATCGTAATTACGAGCGTGCTGAACTTCAATTTGAAAATAAAGTGAATGT
CATCATCGGTGAGAACGCTCAAGGGAAGACAAATCTCATGGAAGCGATCTATGTTTTGTCGATGGCGAAATCACATCGCA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGTCG
ATCCCGATGCAGCTTGTCATTTCCAAGAAGGGGAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTGAGCCGGTA
TGTAGGAGCGCTGAATACAATTATGTTCGCGCCCGAGGACTTAAATCTCGTAAAGGGCAGCCCGCAAGTAAGACGGCGGT
TTCTTGACATGGAAATCGGCCAGGTATCTCCAGTCTATTTGTACGATCTTTCTCTGTACCAGAAAATTCTTACGCAAAGA
AATCATTTTTTGAAACAGCTGCAAAGCAGGAAACAGACTGACCAGACAATGCTCGACGTTCTGACTGAACAGCTGATCGA
GACTGCTGCAAAGGTTGTCGTAAAACGCCTGCAATTTACAGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGAA
TTTCAAGAGGGCTTGAAGAACTGACGCTGAAGTATCAGACGGCTCTTGAGGTATCAGATCCCGAAGACTTGTCGAAAATA
GGAGATAGTTACCAAAGGGCGTTTTCAAAGCTAAGAGAAAAAGAAATTGAGCGTGGTGTAACGCTGTCAGGACCTCATCG
GGATGATGTTCTTTTTTATGTGAACGGACGCGATGTGCAAACATATGGTTCGCAGGGGCAGCAGCGGACAACGGCATTGT
CACTCAAGCTGGCGGAAATTGACTTGATTCATGAAGAAATCGGAGAATACCCTATCTTACTTTTGGATGATGTGCTGAGT
GAGCTGGATGACTATCGGCAGTCGCATTTGCTTCATACGATCCAAGGCCGTGTTCAAACGTTTGTCACTACGACAAGTGT
AGATGGCATTGATCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

95.405

100

0.954