Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   P6988_RS24740 Genome accession   NZ_CP120720
Coordinates   1885924..1887021 (+) Length   365 a.a.
NCBI ID   WP_019275431.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1880924..1892021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS24710 (P6988_24710) - 1882309..1882560 (-) 252 WP_029236068.1 YgjV family protein -
  P6988_RS24715 (P6988_24715) - 1882855..1883175 (-) 321 WP_006961083.1 DUF496 family protein -
  P6988_RS24720 (P6988_24720) - 1883369..1883563 (+) 195 WP_064486358.1 hypothetical protein -
  P6988_RS24725 (P6988_24725) - 1883593..1884252 (+) 660 WP_277685399.1 YceH family protein -
  P6988_RS24730 (P6988_24730) - 1884252..1884569 (+) 318 WP_038161424.1 GIY-YIG nuclease family protein -
  P6988_RS24735 (P6988_24735) traF 1884636..1885775 (+) 1140 WP_045987314.1 conjugal transfer protein TraF -
  P6988_RS24740 (P6988_24740) luxP 1885924..1887021 (+) 1098 WP_019275431.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  P6988_RS24745 (P6988_24745) luxQ 1887021..1889591 (+) 2571 WP_277685400.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  P6988_RS24750 (P6988_24750) - 1889577..1890242 (-) 666 WP_045987304.1 PilZ domain-containing protein -
  P6988_RS24755 (P6988_24755) glpD 1890349..1891881 (-) 1533 WP_277685401.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41247.46 Da        Isoelectric Point: 5.6651

>NTDB_id=808324 P6988_RS24740 WP_019275431.1 1885924..1887021(+) (luxP) [Vibrio coralliilyticus strain Rb102]
MFKATLLSLAVAVSATSQAHTTQVLNGYWQYDEYLDSHPVQKQLTDALSETVRNYPTPISAKQDKPVSIAVVYPGQQISD
YWVRNIKAFETRLEKLGISYKINQVFTRPNLDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWDDQQPFMYVGFDHIKGARILEQYYKDTIPKESRYSVLYFSEGYVSDARGDTFIEEMSHHDSYKLSSSYYTTAT
RESGFNAAVKAIEKDPSISFIYACSTDVALGAVEALKSMKREDILINGWGGGSAELEAISKGDLDVTAMRMNDDTGIAMA
EAIKWDLEGKDVPHVYSGDFEIVTKADSPSKVEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=808324 P6988_RS24740 WP_019275431.1 1885924..1887021(+) (luxP) [Vibrio coralliilyticus strain Rb102]
ATGTTTAAAGCAACGCTGTTATCATTGGCGGTCGCTGTATCAGCGACAAGTCAGGCACACACTACACAAGTCCTCAATGG
TTACTGGCAATACGACGAATATCTCGATTCCCATCCCGTACAGAAGCAGTTAACGGATGCGTTGTCTGAAACAGTAAGAA
ATTACCCAACTCCGATTTCGGCGAAGCAAGATAAGCCAGTTTCTATTGCTGTGGTTTATCCTGGGCAGCAGATTTCGGAC
TATTGGGTTCGAAATATCAAAGCTTTTGAAACTCGTTTAGAAAAGTTAGGAATCAGCTACAAGATAAACCAAGTTTTTAC
TCGGCCGAATCTCGATGTCAGACAACAAAGTCTTTCGTTGCTTGAAGCGGTTCAAAATAAAGCTGACTACTTGATATTCA
CGCTTGACACGACTCGTCACCGCAAATTTATTGAACATGTTTTGAGTTCAACCGATACCAAGCTCATTCTGCAAAATATT
ACGACCCCTGTAAGAGCTTGGGACGATCAGCAACCCTTCATGTATGTGGGGTTCGATCACATCAAAGGCGCTCGAATTCT
TGAGCAGTACTACAAAGACACCATCCCTAAAGAAAGCCGTTACTCGGTGCTTTACTTTTCTGAAGGTTACGTGAGTGATG
CTCGTGGTGACACGTTCATTGAAGAGATGAGTCATCATGATTCGTACAAGCTATCTTCATCGTATTACACCACAGCAACT
CGAGAATCTGGGTTTAATGCTGCGGTTAAAGCGATAGAGAAAGATCCAAGTATCTCCTTCATATATGCGTGCTCTACAGA
TGTTGCCTTAGGAGCTGTAGAAGCACTTAAATCGATGAAGAGAGAGGATATTCTTATTAATGGTTGGGGTGGTGGTAGCG
CCGAGTTGGAGGCTATTTCTAAAGGCGATCTAGATGTTACAGCCATGAGAATGAATGATGACACTGGTATTGCTATGGCA
GAAGCTATTAAGTGGGATCTTGAAGGTAAAGATGTACCGCACGTCTACTCTGGTGACTTTGAAATAGTGACCAAAGCGGA
CAGCCCTTCAAAAGTTGAGAAATTAAAGCAGAGAGCGTTTAGGTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.722

98.63

0.638