Detailed information NTG0808313

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: P6988_RS12030
• Genome accession: NZ_CP120719
• Coordinates: 2580651..2582075 (+)
• Length: 474 a.a.
• NCBI ID: WP_277683995.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus strain Rb102
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2575651..2587075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6988_RS12010 (P6988_12010)	cobT	2576088..2577116 (-)	1029	WP_277683992.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
P6988_RS12015 (P6988_12015)	-	2577123..2577734 (-)	612	WP_277683993.1	flavin reductase family protein	-
P6988_RS12020 (P6988_12020)	-	2578260..2578946 (+)	687	WP_171340898.1	NAD(P)H-binding protein	-
P6988_RS12025 (P6988_12025)	-	2579138..2580511 (+)	1374	WP_277683994.1	L-cystine transporter	-
P6988_RS12030 (P6988_12030)	sbcB	2580651..2582075 (+)	1425	WP_277683995.1	exodeoxyribonuclease I	Machinery gene
P6988_RS12035 (P6988_12035)	-	2582220..2582585 (+)	366	WP_006962035.1	CidA/LrgA family protein	-
P6988_RS12040 (P6988_12040)	-	2582585..2583262 (+)	678	WP_006962033.1	CidB/LrgB family autolysis modulator	-
P6988_RS12045 (P6988_12045)	cdd	2583516..2584403 (+)	888	WP_043007793.1	cytidine deaminase	-
P6988_RS12050 (P6988_12050)	-	2584458..2585660 (-)	1203	WP_038511925.1	HD-GYP domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54662.91 Da
• Isoelectric Point: 4.9570

>NTDB_id=808313 P6988_RS12030 WP_277683995.1 2580651..2582075(+) (sbcB) [Vibrio coralliilyticus strain Rb102]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAASKGLPEP
EFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRNKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=808313 P6988_RS12030 WP_277683995.1 2580651..2582075(+) (sbcB) [Vibrio coralliilyticus strain Rb102]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTTTTTGATTATGAAACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGACGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTACCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTGGGTTACAATAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTATTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTATCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCCATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTAAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCAACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGTTGGGACGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATCGTGGTCGATTTGGCGAAAGATCCTCA
GCCGTTGTTGGATTTAGATGTAGAACAGCTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTGGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGCTTCTTCTCTCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGTTGAATTTGGAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.647	99.789	0.785