Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   P6988_RS10535 Genome accession   NZ_CP120719
Coordinates   2253500..2254987 (-) Length   495 a.a.
NCBI ID   WP_277683824.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2248500..2259987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS10510 (P6988_10510) - 2248503..2249282 (-) 780 WP_277683820.1 lipopolysaccharide biosynthesis protein -
  P6988_RS10515 (P6988_10515) - 2249438..2249953 (-) 516 WP_277683821.1 hypothetical protein -
  P6988_RS26645 - 2249964..2251160 (-) 1197 WP_420918807.1 glycosyltransferase -
  P6988_RS10525 (P6988_10525) - 2251153..2252355 (-) 1203 WP_277683822.1 glycosyltransferase -
  P6988_RS10530 (P6988_10530) - 2252455..2253522 (-) 1068 WP_277683823.1 glycosyltransferase family 4 protein -
  P6988_RS10535 (P6988_10535) luxO 2253500..2254987 (-) 1488 WP_277683824.1 sigma-54-dependent transcriptional regulator Regulator
  P6988_RS10540 (P6988_10540) - 2255009..2257309 (-) 2301 WP_277683825.1 response regulator -
  P6988_RS10545 (P6988_10545) - 2257332..2258132 (-) 801 WP_277683826.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  P6988_RS10550 (P6988_10550) - 2258142..2258837 (-) 696 WP_277683827.1 chromosome partitioning protein ParA -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55148.95 Da        Isoelectric Point: 5.5266

>NTDB_id=808312 P6988_RS10535 WP_277683824.1 2253500..2254987(-) (luxO) [Vibrio coralliilyticus strain Rb102]
MRAKVLLIEDSTSLAVLYKQYVKDEAFDLFHVETGRDAKAFIERNVPQLVILDLKLPDMNGEDILDWINENQVPTSVVVA
TAHGSVDIAVSLLQKGAKDFLEKPIQADRLKTSINLHLQQAKLEHLVEDIEAKFDRNRFHGFIGSCLPMQGVYKIIDSVA
PTTASVFIIGESGTGKEVCAEAIHKESKRNDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEMKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
TTLATHFLKLFAKEDGKKFNGINRDAESLLKHYSWPGNVRQLQNVIRNIVVLNDESKLSVAHLPDQISKSNKSAKPRAAQ
AAIRYEAPAQASPVEAVDTTIQASTPVVESVNTQSSTPVTIRPMWQVERETIQQAIDFCDGNVLNAAVLLELSPSTVYRK
KQAWEAEEDEQQYAD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=808312 P6988_RS10535 WP_277683824.1 2253500..2254987(-) (luxO) [Vibrio coralliilyticus strain Rb102]
ATGAGAGCAAAAGTACTACTGATTGAAGACTCCACATCTCTGGCAGTCCTTTACAAACAGTACGTAAAAGATGAAGCGTT
TGACCTGTTTCATGTTGAAACAGGTCGTGATGCCAAAGCATTCATAGAACGAAACGTACCACAACTTGTGATTTTAGATC
TCAAGCTTCCGGACATGAACGGCGAAGATATCCTGGACTGGATCAACGAGAATCAAGTACCAACCTCCGTCGTCGTTGCA
ACCGCACACGGTTCCGTGGATATCGCGGTAAGCTTGCTTCAGAAAGGGGCTAAAGACTTTCTCGAAAAGCCGATTCAGGC
AGACCGACTCAAAACGTCGATAAACCTCCACTTACAGCAAGCTAAACTCGAACACTTAGTCGAAGATATCGAAGCGAAAT
TCGACAGAAATCGCTTCCATGGATTCATCGGCTCTTGTCTACCTATGCAGGGCGTATACAAAATCATCGACTCTGTTGCA
CCAACAACAGCGAGTGTTTTCATCATTGGAGAAAGCGGCACCGGTAAAGAAGTGTGCGCAGAAGCAATTCACAAAGAAAG
TAAACGAAACGATAAACCTTTTATCGCCATCAACTGTGGTGCTATTCCGAAAGATCTTATGGAAAGCGAAATTTTTGGCC
ATGTAAAAGGTGCATTCACAGGGGCGACTACGGACAGAAAAGGCGCGGCATCTTTAGCTCATGGAGGAACGCTCTTCCTT
GACGAGTTATGTGAGATGGAGCTGGAAATGCAGAAGAAACTGCTACGTTTCCTGCAGACAGGTACTTTCACCCCACTCGG
GGGTTCGAAAGAAATGAAGGTCGATGTGCGGATAATCTGCGCGACCAACCGTGATCCATTGCTAGAAGTTGAAGAAGGCC
GATTCCGAGAAGACTTGTACTACCGCGTTCATGTTGTGCCGATTGAGATGCCTCCTTTGAGAGAGCGTGGGAATGACATC
ACAACACTAGCGACTCATTTCCTTAAGCTGTTCGCTAAAGAAGACGGTAAGAAGTTCAATGGTATTAACCGAGACGCTGA
ATCTTTACTCAAGCACTACTCCTGGCCCGGTAATGTGAGACAGCTGCAAAATGTCATTCGCAATATAGTTGTTCTCAACG
ACGAATCAAAGCTCTCTGTCGCTCACCTTCCTGATCAGATTTCAAAAAGTAATAAATCGGCTAAGCCCAGAGCAGCCCAA
GCAGCAATCCGCTATGAAGCTCCTGCTCAAGCGTCACCAGTAGAAGCGGTGGATACGACAATACAAGCGTCAACTCCAGT
GGTTGAGAGTGTTAACACACAAAGTTCTACGCCGGTAACAATACGGCCAATGTGGCAGGTAGAGAGAGAAACCATTCAGC
AAGCCATTGATTTTTGCGATGGTAATGTTCTCAACGCAGCGGTATTACTCGAGTTGAGTCCATCAACCGTTTATCGTAAA
AAACAGGCTTGGGAAGCCGAAGAAGATGAGCAGCAATACGCGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(444-480)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.48

97.172

0.481