Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   P6988_RS05175 Genome accession   NZ_CP120719
Coordinates   1069327..1070310 (+) Length   327 a.a.
NCBI ID   WP_006958149.1    Uniprot ID   A0A097AVA5
Organism   Vibrio coralliilyticus strain Rb102     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064327..1075310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS05140 (P6988_05140) ftsB 1064403..1064681 (+) 279 WP_019277512.1 cell division protein FtsB -
  P6988_RS05145 (P6988_05145) ispD 1064684..1065388 (+) 705 WP_043009251.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  P6988_RS05150 (P6988_05150) ispF 1065392..1065871 (+) 480 WP_095571940.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  P6988_RS05155 (P6988_05155) truD 1065916..1066962 (+) 1047 WP_277684720.1 tRNA pseudouridine(13) synthase TruD -
  P6988_RS05160 (P6988_05160) surE 1066974..1067717 (+) 744 WP_277684947.1 5'/3'-nucleotidase SurE -
  P6988_RS05165 (P6988_05165) - 1067720..1068346 (+) 627 WP_065741165.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  P6988_RS05170 (P6988_05170) nlpD 1068349..1069260 (+) 912 WP_021456683.1 murein hydrolase activator NlpD -
  P6988_RS05175 (P6988_05175) rpoS 1069327..1070310 (+) 984 WP_006958149.1 RNA polymerase sigma factor RpoS Regulator
  P6988_RS05180 (P6988_05180) - 1070371..1071642 (-) 1272 WP_277684721.1 HlyC/CorC family transporter -
  P6988_RS05185 (P6988_05185) - 1071765..1072559 (-) 795 WP_038164050.1 cytochrome C assembly family protein -
  P6988_RS05190 (P6988_05190) ffh 1072765..1074156 (+) 1392 WP_021458280.1 signal recognition particle protein -
  P6988_RS05195 (P6988_05195) rpsP 1074365..1074613 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  P6988_RS05200 (P6988_05200) rimM 1074643..1075191 (+) 549 WP_029236289.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37396.39 Da        Isoelectric Point: 4.7232

>NTDB_id=808303 P6988_RS05175 WP_006958149.1 1069327..1070310(+) (rpoS) [Vibrio coralliilyticus strain Rb102]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=808303 P6988_RS05175 WP_006958149.1 1069327..1070310(+) (rpoS) [Vibrio coralliilyticus strain Rb102]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGGT
TCCGATTCTCGACCTATGCTACATGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAGGAACTGAATATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
AACGGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAACGAACGCATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTGCTGGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
CTTAGCACGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGTTTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAGTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70 region 2 (Sigma70_r2)

(88-157)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70, region 4 (Sigma70_r4)

(256-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097AVA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.988

100

0.85