Detailed information NTG0808289

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: P6988_RS01850
• Genome accession: NZ_CP120719
• Coordinates: 377785..378792 (-)
• Length: 335 a.a.
• NCBI ID: WP_006963339.1
• Uniprot ID: A0A097QNP8
• Organism: Vibrio coralliilyticus strain Rb102
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 372785..383792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6988_RS01820 (P6988_01820)	frdC	373361..373744 (+)	384	WP_277684502.1	fumarate reductase subunit FrdC	-
P6988_RS01825 (P6988_01825)	frdD	373757..374134 (+)	378	WP_277684503.1	fumarate reductase subunit FrdD	-
P6988_RS01830 (P6988_01830)	-	374194..374877 (-)	684	WP_277684504.1	nitroreductase family protein	-
P6988_RS01835 (P6988_01835)	hslU	375042..376376 (-)	1335	WP_095561276.1	HslU--HslV peptidase ATPase subunit	-
P6988_RS01840 (P6988_01840)	hslV	376414..376959 (-)	546	WP_006963336.1	ATP-dependent protease subunit HslV	-
P6988_RS01845 (P6988_01845)	-	377121..377669 (-)	549	WP_277684505.1	SPOR domain-containing protein	-
P6988_RS01850 (P6988_01850)	cytR	377785..378792 (-)	1008	WP_006963339.1	DNA-binding transcriptional regulator CytR	Regulator
P6988_RS01855 (P6988_01855)	priA	379041..381242 (-)	2202	WP_277684506.1	primosomal protein N'	-
P6988_RS01860 (P6988_01860)	rpmE	381534..381752 (+)	219	WP_019277580.1	50S ribosomal protein L31	-
P6988_RS01865 (P6988_01865)	-	382004..383281 (+)	1278	WP_038513924.1	malic enzyme-like NAD(P)-binding protein	-
P6988_RS01870 (P6988_01870)	metJ	383370..383690 (-)	321	WP_277684507.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36965.58 Da
• Isoelectric Point: 6.0455

>NTDB_id=808289 P6988_RS01850 WP_006963339.1 377785..378792(-) (cytR) [Vibrio coralliilyticus strain Rb102]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPSSAVLCQFRYQGYQQALRRAGISMNPNYCIYGDFSFEDGAKAVRQLLALPEPPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRVI

Nucleotide

• Length: 1008 bp

>NTDB_id=808289 P6988_RS01850 WP_006963339.1 377785..378792(-) (cytR) [Vibrio coralliilyticus strain Rb102]
ATGGCGACAATGAAGGATGTTGCTCAGCTAGCAGGCGTTTCAACTGCAACAGTATCGCGTGCTCTAATGAACCCGGAAAA
AGTATCTTCAGCTACAAGGAAGCGAGTAGAAGATGCAGTATTAGAAGCCGGATATTCACCAAATTCTCTGGCGCGCAACC
TGCGCCGAAATGAGTCCAAAACCATAATTGCAATCATCCCGGATATTTGTGATCCCTACTACACCGAGATCATCCGTGGA
ATTGAAGACGCTGCGATGGAACATGGATACATCGTGCTGCTGGGAGACAGTGGTCAGCAGAAAAAGCGTGAGAGTTCTTT
TGTCAATCTTGTCTTTACTAAGCAGGCCGATGGAATGTTGCTGCTTGGTACTGATCTGCCGTTTGACGTCAGCAAACCTG
AGCAGAAAAACCTGCCGCCTATGGTGATGGCATGTGAGTTTGCACCTGAACTGGAGCTGCCAACGGTGCACATTGATAAC
CTGACATCGGCATTTGAAGCGGTGAACTATCTGACGCAGATGGGTCACAAGCGCATTGCTCAGATCTCTGGTCCTAGTTC
TGCGGTGCTATGCCAGTTCCGCTACCAAGGTTACCAGCAAGCGCTACGCCGAGCCGGCATCAGTATGAACCCAAATTACT
GTATCTACGGTGACTTCTCTTTTGAAGATGGGGCGAAAGCCGTCAGACAGTTGTTGGCTTTACCCGAGCCTCCGACCGCT
ATTTTTTGTCACAACGATGCAATGGCCATCGGGGCGATTCAAGAGGCGAAAAAGCTGGGCTTGCGTGTCCCGCAAGATCT
GTCTGTGGTTGGCTTTGATGACATTCAGTTTGCTCAATACTGCGATCCACCACTGACGACCATTTCTCAGCCACGCTACG
AAATTGGACGACAGGCGATGTTGATGATGCTCGAATTGCTGCGCGGTCATGATGTTCGTGCCGGTTCTCGACTGTTGGAA
ACTCAGCTGGTTGTCCGCGAAAGTGCTGCTCCACCGCGAGTCATCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A097QNP8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	92.771	99.104	0.919
cytR	Vibrio parahaemolyticus RIMD 2210633	90.09	99.403	0.896