Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   P6988_RS00635 Genome accession   NZ_CP120719
Coordinates   139426..139944 (-) Length   172 a.a.
NCBI ID   WP_006957088.1    Uniprot ID   A0A097QN45
Organism   Vibrio coralliilyticus strain Rb102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 134426..144944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS00615 (P6988_00615) - 136585..137841 (-) 1257 WP_029236357.1 HD-GYP domain-containing protein -
  P6988_RS00620 (P6988_00620) - 137960..138367 (-) 408 WP_006957092.1 VOC family protein -
  P6988_RS00630 (P6988_00630) - 138904..139380 (+) 477 WP_038164643.1 RDD family protein -
  P6988_RS00635 (P6988_00635) luxS 139426..139944 (-) 519 WP_006957088.1 S-ribosylhomocysteine lyase Regulator
  P6988_RS00640 (P6988_00640) - 139967..140536 (-) 570 WP_277684938.1 hypothetical protein -
  P6988_RS00645 (P6988_00645) gshA 140574..142142 (-) 1569 WP_277684417.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.83 Da        Isoelectric Point: 4.7134

>NTDB_id=808285 P6988_RS00635 WP_006957088.1 139426..139944(-) (luxS) [Vibrio coralliilyticus strain Rb102]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=808285 P6988_RS00635 WP_006957088.1 139426..139944(-) (luxS) [Vibrio coralliilyticus strain Rb102]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACTCGCATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGTGATACCATTACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATTCTTTCTGAGAAAGGCATTC
ACACACTGGAACACTTATACGCAGGTTTCATGCGCAGTCACTTAAACGGTGATAGCGTAGAAATTATCGATATTTCACCA
ATGGGCTGCCGTACTGGCTTTTACATGAGCCTGATTGGCACACCAACAGAAGAGCAGGTAGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAACTAAACGAATATCAATGTGGCACTGCTGCGATGC
ACTCTCTTGAAGAAGCTAAGCAGATTGCTCAAGCTATCATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAGTCAATGCTTAAAGAGCTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QN45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872