Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P0X86_RS26965 Genome accession   NZ_CP120718
Coordinates   5928517..5928957 (-) Length   146 a.a.
NCBI ID   WP_192570673.1    Uniprot ID   -
Organism   Paenibacillus sp. BR1-192     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5923517..5933957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0X86_RS26935 (P0X86_26935) - 5924543..5924707 (-) 165 WP_009593971.1 sporulation protein Cse60 -
  P0X86_RS26940 (P0X86_26940) - 5924918..5925610 (+) 693 WP_277746908.1 hypothetical protein -
  P0X86_RS26945 (P0X86_26945) - 5925772..5926011 (+) 240 WP_015737275.1 WGxxGxxG family protein -
  P0X86_RS26950 (P0X86_26950) - 5926187..5926636 (+) 450 WP_096776528.1 hypothetical protein -
  P0X86_RS26955 (P0X86_26955) - 5926757..5927146 (-) 390 WP_096776529.1 YmaF family protein -
  P0X86_RS26960 (P0X86_26960) - 5927167..5927928 (-) 762 WP_277749096.1 DUF2935 domain-containing protein -
  P0X86_RS26965 (P0X86_26965) nucA/comI 5928517..5928957 (-) 441 WP_192570673.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P0X86_RS26970 (P0X86_26970) - 5929369..5929623 (-) 255 WP_277746909.1 hypothetical protein -
  P0X86_RS26975 (P0X86_26975) - 5930231..5930776 (-) 546 WP_127589995.1 dihydrofolate reductase family protein -
  P0X86_RS26980 (P0X86_26980) - 5930801..5930932 (-) 132 WP_277746910.1 hypothetical protein -
  P0X86_RS26985 (P0X86_26985) - 5931871..5932086 (-) 216 WP_277746911.1 hypothetical protein -
  P0X86_RS26990 (P0X86_26990) - 5932172..5932393 (-) 222 WP_277746912.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16221.24 Da        Isoelectric Point: 4.4746

>NTDB_id=808272 P0X86_RS26965 WP_192570673.1 5928517..5928957(-) (nucA/comI) [Paenibacillus sp. BR1-192]
MKKLFLKFGTVVLSLLLVWLVLNYFPELDDGDVYPPIRGTVVELEFPADKYPETADHIKKAIESGHSDVCTIDRTGAEDN
RSSSLKGIPTKKGYDRDEWPMAMCAEGGDGASVEYIDPSDNRGAGSWVGNYLEGYPDGTQVHFIFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=808272 P0X86_RS26965 WP_192570673.1 5928517..5928957(-) (nucA/comI) [Paenibacillus sp. BR1-192]
ATGAAAAAGTTATTCTTGAAATTTGGAACAGTGGTCTTATCTTTGTTATTGGTTTGGTTGGTCCTTAATTATTTTCCGGA
GTTAGATGACGGTGATGTATACCCACCAATACGGGGTACCGTTGTCGAATTAGAGTTTCCAGCGGATAAATATCCTGAGA
CGGCGGATCACATAAAAAAGGCCATTGAATCCGGCCATTCCGATGTTTGTACCATTGATCGAACTGGTGCAGAGGATAAC
AGGAGTTCTTCACTAAAGGGAATCCCTACGAAAAAAGGGTATGATCGGGATGAGTGGCCGATGGCCATGTGTGCCGAAGG
AGGAGACGGTGCAAGTGTCGAATACATAGATCCATCCGACAATCGAGGAGCTGGCAGCTGGGTAGGCAACTATTTGGAGG
GATACCCGGACGGTACCCAGGTACATTTCATTTTTAGATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.874

70.548

0.5