Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P0X86_RS21880 Genome accession   NZ_CP120718
Coordinates   4889912..4890865 (-) Length   317 a.a.
NCBI ID   WP_277746428.1    Uniprot ID   -
Organism   Paenibacillus sp. BR1-192     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4884912..4895865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0X86_RS21860 (P0X86_21860) - 4885434..4886858 (-) 1425 WP_277746426.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  P0X86_RS21865 (P0X86_21865) - 4887045..4888016 (-) 972 WP_096776758.1 siderophore ABC transporter substrate-binding protein -
  P0X86_RS21870 (P0X86_21870) - 4888220..4888978 (-) 759 WP_009589818.1 ABC transporter ATP-binding protein -
  P0X86_RS21875 (P0X86_21875) - 4888975..4889922 (-) 948 WP_277746427.1 iron chelate uptake ABC transporter family permease subunit -
  P0X86_RS21880 (P0X86_21880) ceuB 4889912..4890865 (-) 954 WP_277746428.1 ABC transporter permease Machinery gene
  P0X86_RS21885 (P0X86_21885) - 4891389..4891991 (+) 603 WP_009589776.1 nitroreductase family protein -
  P0X86_RS21890 (P0X86_21890) - 4892361..4892963 (+) 603 WP_213579235.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  P0X86_RS21895 (P0X86_21895) - 4893036..4893131 (-) 96 WP_015736424.1 hypothetical protein -
  P0X86_RS21900 (P0X86_21900) - 4893248..4893946 (-) 699 WP_213579236.1 nucleotidyltransferase domain-containing protein -
  P0X86_RS21905 (P0X86_21905) - 4894219..4894813 (+) 595 Protein_4343 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34961.36 Da        Isoelectric Point: 9.8957

>NTDB_id=808268 P0X86_RS21880 WP_277746428.1 4889912..4890865(-) (ceuB) [Paenibacillus sp. BR1-192]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKYKDAIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYLSIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=808268 P0X86_RS21880 WP_277746428.1 4889912..4890865(-) (ceuB) [Paenibacillus sp. BR1-192]
ATGAAGATTAGATACTTATTCGCAGCCGTTGTGGTACTCTCCATAATCTCGTTATTTATTGGAGTTAAAGATATCTCGCC
ACTGGAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCACGGCTTGTCAGCCTCATCT
TGGCTGGAGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTATCGCCGACGACGGCG
GGCACTATGGACTCCGCCAGATTGGGGATCTTGGTTGCCATGCTCGTCTTTACGACAAGCGGCCCGCTTATCAAAATGCT
CGTGGCATTCGTATTCGCACTGGCAGGAACCTTTATCTTCATGAAGATACTGGATCGGATCAAGTACAAGGACGCGATCT
TCATCCCGCTGGTAGGGCTTATGTTCGGTAATATCGTCAGCTCGGTCGCGACCTTCTTTGCCTACAAATATGATCTTATA
CAGAATATGTCGGCTTGGCTGCAGGGCGATTTCTCCATGATCATGAAGGGCCAATATGAAATGCTGTATCTCAGTATCCC
GCTTGTGATTCTGGCTTACCTGTTTGCCAACAAGTTTACGGTAGCCGGAATGGGAGAGGAATTCGCAACCAACCTGGGAC
TTCATTATCGGCGAGTCGTGAACCTGGGATTGGTCATCGTTGCGCTGGTTACGGCTTCCGTTGTGCTGACCGTCGGCGTG
ATTCCGTTCCTTGGTCTGATCATACCTAATATTGTCAGTCTGTACTTAGGGGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTTGGCCGGATCATCATTTATCCCTATGAAATTCCGATTA
GTCTGACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.968

99.369

0.536