Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RKE30_RS33710 Genome accession   NZ_CP134875
Coordinates   7700637..7702619 (+) Length   660 a.a.
NCBI ID   WP_313748098.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7695637..7707619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS33690 (RKE30_33690) - 7695959..7696261 (+) 303 WP_313748095.1 YtxH domain-containing protein -
  RKE30_RS33695 (RKE30_33695) - 7696287..7697194 (+) 908 WP_399135162.1 IS5 family transposase -
  RKE30_RS33700 (RKE30_33700) - 7697288..7698742 (+) 1455 WP_313748096.1 FGGY family carbohydrate kinase -
  RKE30_RS33705 (RKE30_33705) rcrP 7698904..7700637 (+) 1734 WP_313748097.1 ABC transporter ATP-binding protein Regulator
  RKE30_RS33710 (RKE30_33710) rcrQ 7700637..7702619 (+) 1983 WP_313748098.1 ABC transporter ATP-binding protein Regulator
  RKE30_RS33715 (RKE30_33715) - 7702682..7703971 (-) 1290 WP_313748099.1 RNA polymerase sigma factor -
  RKE30_RS33720 (RKE30_33720) dnaG 7704408..7706318 (-) 1911 WP_313748100.1 DNA primase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 71165.87 Da        Isoelectric Point: 6.6311

>NTDB_id=808262 RKE30_RS33710 WP_313748098.1 7700637..7702619(+) (rcrQ) [Streptomyces sp. Li-HN-5-11]
MAGPMGRMMAGGGPDNRSMDFKKSGRRLIAQFKPERITIYGLVLCVVVSVTLSVIGPKILGKATDLVFAGIIGRQMPAGL
TKDQVLQGMRQRGQGAIADMLGSTDFTPGKGIDFGAVGSVLLFALSTFMVAGLLMAVATRLVNRSVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLVMMFYVSWLLALVALVTVPLSFLVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQDESAAQFAEQNQALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGVRPEELRGRVALE
NVSFRYDPEKPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGIDVAKMSRDELRSAIGMVLQDT
WLFGGTIAENIAYGAGAGGGARSALGQGGGGRRAGEVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQL
ITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAKLQHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHDELLAA
DGAYARLYKAQFAQAVAEVD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=808262 RKE30_RS33710 WP_313748098.1 7700637..7702619(+) (rcrQ) [Streptomyces sp. Li-HN-5-11]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGTGGCGGCCCCGACAACCGCTCGATGGACTTCAAGAAGTCGGGCAGACG
GCTCATCGCCCAGTTCAAGCCGGAACGGATCACGATCTACGGCCTGGTGCTGTGCGTGGTGGTGAGCGTCACGCTGAGCG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGGATTATCGGGCGCCAGATGCCGGCGGGTCTG
ACCAAGGACCAGGTGCTGCAGGGCATGCGGCAGCGCGGCCAGGGTGCCATAGCGGACATGCTCGGCAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGCAGCGTCCTGCTGTTCGCGCTGAGCACGTTCATGGTCGCCGGCCTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGTCGGTGAACCGGACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTGCTCTCCCGTGCCACCAACGACATCGACAA
CATCGGGCAGACGCTGCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTGACCATCATCGGCGTGCTCGTCATGATGT
TCTACGTCTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTGGCCACGCGTGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAACTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACCAGGCGCTGTACGAGGCGG
GGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTGGCC
GTGGTCGGCGGTCTGCGGGTCGCGTCCGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCCGGGCGTGCGGCCGGAGGAACTGCGCGGGCGGGTGGCGCTGGAG
AACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGACGGTGGAGCCCGGTCAGACGGTCGC
GATCGTGGGACCGACGGGAGCGGGCAAGACCACGCTGGTCAACCTGCTCATGCGGTTCTACGACGTCTCGGGCGGGCGCA
TCACGCTGGACGGCATCGACGTGGCGAAGATGTCCCGGGACGAACTGCGGTCCGCCATCGGCATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCCTACGGCGCCGGAGCAGGAGGGGGTGCGCGAAGCGCACTCGGTCA
GGGTGGCGGCGGGCGACGGGCGGGTGAGGTCACCCGCGGGGAGATCGAGGAGGCGGCGCGGGCCGCGCACGCCGACCGGT
TCATCCGTACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCTCCGGGGTCAGCGCCGGTGAGAAGCAGCTC
ATCACCATAGCGAGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTGGACGAGGCGACGAGTTCGGTCGACACCCGTAC
GGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTGCAGCACGGCAGGACGTCGTTCGTCATCGCGCACCGGCTCTCCACGA
TCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAGCAGGGCACCCACGACGAGCTGCTGGCGGCC
GACGGGGCCTACGCACGCCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCGGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(45-351)

ABC transporter (ABC_tran)

(414-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.502

97.424

0.385