Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RKE30_RS33705 Genome accession   NZ_CP134875
Coordinates   7698904..7700637 (+) Length   577 a.a.
NCBI ID   WP_313748097.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7693904..7705637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS41745 - 7693915..7694049 (+) 135 Protein_6683 hypothetical protein -
  RKE30_RS33670 (RKE30_33670) - 7694348..7695169 (+) 822 WP_313748094.1 site-specific integrase -
  RKE30_RS33690 (RKE30_33690) - 7695959..7696261 (+) 303 WP_313748095.1 YtxH domain-containing protein -
  RKE30_RS33695 (RKE30_33695) - 7696287..7697194 (+) 908 WP_399135162.1 IS5 family transposase -
  RKE30_RS33700 (RKE30_33700) - 7697288..7698742 (+) 1455 WP_313748096.1 FGGY family carbohydrate kinase -
  RKE30_RS33705 (RKE30_33705) rcrP 7698904..7700637 (+) 1734 WP_313748097.1 ABC transporter ATP-binding protein Regulator
  RKE30_RS33710 (RKE30_33710) rcrQ 7700637..7702619 (+) 1983 WP_313748098.1 ABC transporter ATP-binding protein Regulator
  RKE30_RS33715 (RKE30_33715) - 7702682..7703971 (-) 1290 WP_313748099.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62492.85 Da        Isoelectric Point: 6.8369

>NTDB_id=808261 RKE30_RS33705 WP_313748097.1 7698904..7700637(+) (rcrP) [Streptomyces sp. Li-HN-5-11]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGAVMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQAFSAREVGQFGAPSLITRTTNDVQQVQMLALMSFTLMASAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLAICVTLIVRRLRPLFRSMQTRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFRKANGDLTEMALATGRLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PSAPVVELRRHGHLEIRAAGFRYPGAEEPVLKAVDLVASPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TVEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVSKLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGAGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=808261 RKE30_RS33705 WP_313748097.1 7698904..7700637(+) (rcrP) [Streptomyces sp. Li-HN-5-11]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGTTGAACGCCCACATCATCGACAACGGTGTCGTGAAGGGTGACACCGGCTACA
TCCTGACGTTCGGCGCCGTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCGGTGTACTACGGTGCC
CGGACCGCGTCGGCGCTCGGCCGGGACGTCCGGGCCGCCGTCTTCGACCGTGTGCAGGCGTTCTCCGCGCGTGAGGTCGG
CCAATTCGGCGCGCCGTCCCTCATCACCCGTACGACGAACGACGTGCAGCAGGTACAGATGCTGGCCCTGATGTCGTTCA
CCCTGATGGCGTCGGCGCCCATCATGTGCGTGGGCGGTATCGTCCTGGCTCTCGGCCTGGACGTGCCGTTGTCGGGCGTA
CTGGTCGCCGTCGTACCGGTCCTGGCCATCTGTGTGACGCTGATCGTGCGCCGACTGCGCCCGCTGTTCCGGTCCATGCA
GACACGTCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTCCGGGACG
AGTACGAGAAGGATCGCTTCCGCAAGGCCAACGGGGACCTGACGGAGATGGCCCTGGCCACCGGCCGGCTGCTCGCGCTG
ATGTTCCCGATCGTGATGACGGTGGTGAACCTGTCGTCCATAGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTGGGCACCGACTCGAGCGTCGTGCCG
CCGAGCGCTCCGGTCGTCGAGCTGCGCCGCCACGGCCACCTGGAGATCCGGGCGGCCGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCCAGCCCCGGTGAGGTGACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCCACCCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCCACCGACGGCGAGGTCCTCGTCGACGGGGTGGACGTGCGG
ACCGTGGAGCCGAAGCTGCTGGCGCGGACGGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGCACCGTGGCGAC
CAACCTGCGCTACGGCAACCCCGACGCCACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCAGCAAGCTGGAGGGCGGGCTGAACGCGCCGATCGCACAGGGCGGGACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTG
GCCATCGCCCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCGGCGCTCGCCCGGGAGACCGCGGAGGCGACCGTCGTGATCGTCGCGCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTAGTCCTGGACGAGGGACGCGTCGTCGGCGCCGGCCGCCATCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.726

100

0.39