Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RKE30_RS30555 Genome accession   NZ_CP134875
Coordinates   7015704..7018742 (-) Length   1012 a.a.
NCBI ID   WP_313747528.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7010704..7023742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS30535 (RKE30_30535) - 7011992..7012939 (+) 948 WP_313747524.1 hypothetical protein -
  RKE30_RS30540 (RKE30_30540) - 7012977..7013405 (-) 429 WP_313747525.1 Rieske (2Fe-2S) protein -
  RKE30_RS30545 (RKE30_30545) - 7013623..7014687 (+) 1065 WP_313747526.1 LacI family DNA-binding transcriptional regulator -
  RKE30_RS30550 (RKE30_30550) - 7014684..7015595 (+) 912 WP_313747527.1 carbohydrate kinase -
  RKE30_RS30555 (RKE30_30555) uvrA 7015704..7018742 (-) 3039 WP_313747528.1 excinuclease ABC subunit UvrA Machinery gene
  RKE30_RS30560 (RKE30_30560) - 7018977..7019663 (+) 687 WP_313747529.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  RKE30_RS30565 (RKE30_30565) - 7019709..7020365 (+) 657 WP_313747530.1 MBL fold metallo-hydrolase -
  RKE30_RS30570 (RKE30_30570) aroQ 7020595..7021068 (-) 474 WP_313749790.1 type II 3-dehydroquinate dehydratase -
  RKE30_RS30575 (RKE30_30575) - 7021222..7022523 (+) 1302 WP_313747531.1 MFS transporter -
  RKE30_RS30580 (RKE30_30580) - 7022579..7023679 (-) 1101 WP_313747532.1 ionic transporter y4hA -

Sequence

Protein


Download         Length: 1012 a.a.        Molecular weight: 111153.14 Da        Isoelectric Point: 7.7152

>NTDB_id=808257 RKE30_RS30555 WP_313747528.1 7015704..7018742(-) (uvrA) [Streptomyces sp. Li-HN-5-11]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGQTVQLSDPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEEMEPRSFSFNSPFGACPECTGIGTRMEVDPELIVPDEEKTLDEGAIHPWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPQRAKKALLYGHKTQIEVRYRNRYGRERVYTTPFEGAVPFVKRRHSEAESDASRE
RFEGYMREVPCPGCEGTRLKPVVLAVTIMDRSIAEVSAMSISDCADFLRELKLDARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKTAD
WVVDIGPGAGEHGGKVVHSGSLKELLANAESQTGQYLSGKKAIPVPGIRRPRDPSRQLTVHGARENNLQDIDVSFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARNVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHIRKLFA
ETTEAKVRGYQPGRFSFNVKGGRCENCAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSISEVLNMPIEEA
MNFFEAVPAINRHLRTLNDVGLGYVRLGQSATTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLLKVLS
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGAGGGLVVAEGTPEQVAGVPASHTGKFLREILGADRISDAEPVRAPRK
AAAKKAVAATSTTRKTATADTAKTANNTASRKAAGATKKTAPAKKTTRARKA

Nucleotide


Download         Length: 3039 bp        

>NTDB_id=808257 RKE30_RS30555 WP_313747528.1 7015704..7018742(-) (uvrA) [Streptomyces sp. Li-HN-5-11]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGACCTGCCTCGGGACTCGCT
CATCGTCTTCACGGGCCTGTCCGGGTCGGGCAAGTCCTCCCTGGCCTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAATCGCTCTCCTCGTACGCCCGGCAGTTCCTCGGACAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTC
TCCCCGGCGGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCCACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGACTGCTCTTCGCCCGCATCGGCAAGCCGCACTGTCCGGAGTGCGGCCGCCCGATCTCGCGCCAGTCCCCGC
AGGCCATCGTCGACAAGGTCCTGGAGCTGCCGGAGGGGAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTGCAGACCAAGGGCTACAGCCGCGCGCGCGTGGACGGGCAGACCGTCCAGCT
CTCCGACCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACGGTGAAGGACAGCG
CCAAGCGACGGCTCACCGACTCCGTCGAGACCGCCCTCGGCCTGTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCATCTGTACTGCCCGTACGACGACCTGTCCTTCGAGGAGAT
GGAGCCCCGCTCCTTCTCCTTCAACTCGCCCTTCGGGGCCTGCCCGGAGTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAACTGATCGTCCCCGACGAGGAGAAGACCCTCGACGAGGGTGCGATCCACCCCTGGTCGCACGGGCACACCAAG
GACTACTTCGGCCGCCTGATCGGCGCCCTCGCGGACGCGCTGGGATTCAGGACCGACATCCCGTTCGCCGGACTGCCGCA
GCGCGCCAAGAAGGCCCTGCTGTACGGCCACAAGACGCAGATCGAGGTCCGCTACCGCAACCGGTACGGGCGCGAGCGCG
TGTACACGACGCCCTTCGAGGGCGCCGTGCCGTTCGTCAAGCGCCGGCACAGCGAGGCCGAGAGCGACGCCAGCCGTGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCGTGCCCCGGTTGTGAGGGCACACGCCTGAAGCCGGTCGTCCTCGCGGTCAC
CATCATGGACAGGTCGATCGCGGAGGTCTCCGCGATGTCGATCAGCGACTGCGCGGACTTCCTGCGCGAACTGAAGCTCG
ACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAGCGGCTGCGGTTCCTGGTCGACGTCGGCCTG
GACTACCTGTCGCTGAACCGCGCGGCGGGCACGCTCTCCGGCGGCGAGGCCCAGCGCATCCGGCTGGCCACCCAGATCGG
CTCCGGTCTCGTCGGCGTCCTGTACGTCCTCGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGATCG
AGACCCTGGTCCGGCTGCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGACCGCCGAC
TGGGTCGTCGACATCGGCCCGGGCGCGGGCGAGCACGGCGGCAAGGTCGTGCACAGCGGCTCCCTCAAGGAACTGCTGGC
CAATGCCGAGTCGCAGACCGGGCAGTACCTGTCCGGCAAGAAGGCCATCCCGGTGCCCGGCATCCGGCGCCCGCGCGACC
CCTCCCGGCAGCTCACGGTGCACGGCGCCCGCGAGAACAACCTCCAGGACATCGACGTGTCCTTCCCCCTGGGCGTGTTC
ACCGCGGTCACCGGTGTCTCCGGCTCCGGCAAGTCGACGCTGGTCAACGACATCCTGTACACGCACCTGGCCCGCGAGCT
GAACGGCGCGCGCAACGTCCCCGGCCGGCACACGCGCGTGGACGGCGACGACCTGGTCGACAAGGTGGTGCACGTCGACC
AGTCGCCCATCGGCCGCACCCCGCGGTCGAACCCGGCGACGTACACCGGCGTCTTCGACCACATCCGCAAGCTGTTCGCC
GAGACCACCGAGGCGAAGGTCCGCGGCTACCAGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CGCGGGCGACGGCACGATCAAGATCGAGATGAACTTCCTCCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGTGCCC
GCTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCCATCTCCGAGGTCCTGAACATGCCGATCGAAGAGGCC
ATGAACTTCTTCGAGGCCGTCCCGGCGATCAACCGCCATCTCAGGACGCTGAACGACGTCGGTCTTGGCTATGTCCGGCT
CGGCCAGTCCGCGACCACGCTGTCCGGCGGTGAGGCGCAGCGCGTGAAGCTCGCCAGCGAGCTGCAGAAGCGCTCCACCG
GCCGTACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTGCTGAAGGTGCTGTCC
GGTCTGGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGATGTCATCAAGACTGCCGACTGGGTCGTCGA
CATGGGTCCGGAAGGCGGCGCCGGTGGCGGTCTGGTCGTCGCCGAGGGCACCCCCGAGCAGGTCGCCGGCGTGCCGGCCA
GCCACACGGGCAAGTTCCTGCGCGAGATCCTCGGCGCCGACCGGATCAGCGACGCGGAGCCCGTGAGGGCCCCGCGCAAG
GCCGCTGCGAAGAAGGCGGTCGCGGCCACGTCCACGACGCGGAAGACGGCCACGGCCGACACGGCCAAGACCGCCAACAA
CACCGCGAGCAGGAAGGCCGCCGGGGCCACGAAGAAGACGGCGCCCGCCAAGAAGACGACGCGGGCCCGCAAGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.249

93.379

0.535
  uvrA Streptococcus pneumoniae TIGR4

57.249

93.379

0.535
  uvrA Streptococcus pneumoniae D39

57.249

93.379

0.535