Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P0M29_RS20910 Genome accession   NZ_CP120711
Coordinates   4038360..4038644 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain 12Y     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4033360..4043644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS20890 (P0M29_20890) - 4034618..4035514 (+) 897 WP_029973683.1 ketopantoate reductase family protein -
  P0M29_RS20895 (P0M29_20895) - 4035543..4036775 (-) 1233 WP_007409644.1 aminopeptidase -
  P0M29_RS20900 (P0M29_20900) - 4036876..4037010 (-) 135 WP_003154559.1 protein YkpC -
  P0M29_RS20905 (P0M29_20905) mreBH 4037082..4038089 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  P0M29_RS20910 (P0M29_20910) abrB 4038360..4038644 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P0M29_RS20915 (P0M29_20915) - 4038817..4040121 (+) 1305 WP_014417634.1 ATP-binding protein -
  P0M29_RS20920 (P0M29_20920) - 4040123..4040950 (+) 828 WP_029973684.1 gamma-glutamylcyclotransferase family protein -
  P0M29_RS20925 (P0M29_20925) ktrC 4040991..4041656 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  P0M29_RS20930 (P0M29_20930) ade 4041805..4043538 (+) 1734 WP_029973685.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=808217 P0M29_RS20910 WP_024085249.1 4038360..4038644(+) (abrB) [Bacillus velezensis strain 12Y]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=808217 P0M29_RS20910 WP_024085249.1 4038360..4038644(+) (abrB) [Bacillus velezensis strain 12Y]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543