Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P0M29_RS20700 Genome accession   NZ_CP120711
Coordinates   4002014..4002478 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain 12Y     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3997014..4007478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS20680 (P0M29_20680) - 3997494..3999314 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  P0M29_RS20685 (P0M29_20685) - 3999339..4000508 (-) 1170 WP_007611083.1 aminotransferase A -
  P0M29_RS20690 (P0M29_20690) - 4000709..4000870 (-) 162 WP_099721949.1 hypothetical protein -
  P0M29_RS20695 (P0M29_20695) cheV 4001059..4001971 (+) 913 Protein_4019 chemotaxis protein CheV -
  P0M29_RS20700 (P0M29_20700) kre 4002014..4002478 (-) 465 WP_003154622.1 YkyB family protein Regulator
  P0M29_RS20705 (P0M29_20705) - 4002601..4003893 (-) 1293 WP_029973674.1 MFS transporter -
  P0M29_RS20710 (P0M29_20710) - 4003969..4004463 (-) 495 WP_089072484.1 L,D-transpeptidase family protein -
  P0M29_RS20715 (P0M29_20715) - 4004538..4005401 (-) 864 WP_021493757.1 metallophosphoesterase -
  P0M29_RS20720 (P0M29_20720) fadH 4005545..4006309 (+) 765 WP_029973675.1 2,4-dienoyl-CoA reductase -
  P0M29_RS20725 (P0M29_20725) - 4006423..4006971 (+) 549 WP_029973676.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=808215 P0M29_RS20700 WP_003154622.1 4002014..4002478(-) (kre) [Bacillus velezensis strain 12Y]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=808215 P0M29_RS20700 WP_003154622.1 4002014..4002478(-) (kre) [Bacillus velezensis strain 12Y]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929