Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RKE30_RS06305 Genome accession   NZ_CP134875
Coordinates   1420453..1421439 (+) Length   328 a.a.
NCBI ID   WP_313743250.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415453..1426439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS06285 (RKE30_06285) - 1416380..1416772 (+) 393 WP_313743246.1 VOC family protein -
  RKE30_RS06290 (RKE30_06290) - 1416952..1418574 (+) 1623 WP_313743247.1 ABC transporter substrate-binding protein -
  RKE30_RS06295 (RKE30_06295) - 1418581..1419504 (+) 924 WP_313743248.1 ABC transporter permease -
  RKE30_RS06300 (RKE30_06300) - 1419497..1420444 (+) 948 WP_313743249.1 ABC transporter permease -
  RKE30_RS06305 (RKE30_06305) amiE 1420453..1421439 (+) 987 WP_313743250.1 ABC transporter ATP-binding protein Regulator
  RKE30_RS06310 (RKE30_06310) - 1421420..1422499 (+) 1080 WP_313743251.1 dipeptide ABC transporter ATP-binding protein -
  RKE30_RS06315 (RKE30_06315) - 1422657..1424780 (-) 2124 WP_313743252.1 prolyl oligopeptidase family serine peptidase -
  RKE30_RS06320 (RKE30_06320) - 1424966..1425160 (+) 195 WP_313743253.1 hypothetical protein -
  RKE30_RS06325 (RKE30_06325) - 1425303..1425893 (-) 591 WP_313743254.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36040.64 Da        Isoelectric Point: 7.0085

>NTDB_id=808209 RKE30_RS06305 WP_313743250.1 1420453..1421439(+) (amiE) [Streptomyces sp. Li-HN-5-11]
MLLEVRDLHVEFRTRDGVAHAVNGVTYQVDAGETLAVLGESGSGKSVTAQAVMGILDTPPGRITAGEILFQGRDLLKMKE
DERRGIRGAGMAMIFQDALSALNPVLTVGDQLGEMFVVHRGTSRRDARAKAVELMDRVRIPAARQRVRDYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELRREYRMGLILITHDLGVVADVADRIAVMYAGRIVESAPVHD
VYKAPAHPYTRGLLDSIPRLDHKGRELYAIRGLPPSLLNIPPGCAFHPRCPLARDVCRTDVPPLYAVDEQRGSACHFWRE
CLDGRADG

Nucleotide


Download         Length: 987 bp        

>NTDB_id=808209 RKE30_RS06305 WP_313743250.1 1420453..1421439(+) (amiE) [Streptomyces sp. Li-HN-5-11]
GTGCTGCTCGAAGTCCGTGACCTGCACGTGGAGTTCCGCACCCGGGACGGGGTCGCCCACGCCGTCAACGGGGTGACGTA
CCAGGTGGACGCGGGGGAGACGCTCGCCGTGCTGGGGGAGTCCGGCTCCGGCAAGTCCGTCACCGCGCAGGCGGTCATGG
GCATCCTGGACACACCGCCCGGCCGGATCACCGCGGGCGAGATCCTCTTCCAGGGCAGGGACCTGCTGAAGATGAAGGAG
GACGAGCGGCGGGGGATCCGGGGCGCCGGCATGGCGATGATCTTCCAGGACGCGCTGTCCGCGCTGAACCCCGTGCTGAC
CGTGGGCGACCAGCTCGGCGAGATGTTCGTCGTGCACCGCGGGACGTCCCGCAGGGACGCGCGGGCGAAGGCCGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCCGCCCGGCAGCGCGTGCGCGACTACCCCCACCAGTTCTCCGGCGGAATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCGCTGGAACCGGCGCTCATCATCGCCGACGAGCCGACCACCGCCCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCGGAGCTGCGGCGCGAGTACCGCATGGGCCTCATCCTCATCACCCACGACC
TGGGTGTGGTCGCCGACGTCGCCGACCGCATCGCGGTGATGTACGCGGGCCGGATCGTGGAGTCGGCCCCGGTCCACGAC
GTCTACAAGGCGCCCGCCCACCCCTACACACGAGGTCTGCTGGACTCCATCCCGCGCCTGGACCACAAGGGCCGGGAACT
CTACGCCATCAGGGGCCTGCCGCCCAGCCTCCTGAACATCCCCCCGGGCTGCGCCTTCCACCCCCGCTGCCCGCTGGCCC
GGGACGTGTGCCGGACCGACGTACCGCCGCTGTACGCGGTGGACGAACAGCGCGGCTCCGCCTGCCACTTCTGGAGGGAG
TGCCTGGATGGCCGAGCAGACGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.417

97.866

0.454
  amiE Streptococcus thermophilus LMG 18311

46.106

97.866

0.451
  amiE Streptococcus thermophilus LMD-9

46.106

97.866

0.451
  oppD Streptococcus mutans UA159

45.231

99.085

0.448